CRAN Package Check Results for Package kml3d

Last updated on 2017-02-27 23:48:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4.1 1.96 33.17 35.13 ERROR
r-devel-linux-x86_64-debian-gcc 2.4.1 1.81 32.63 34.44 ERROR
r-devel-linux-x86_64-fedora-clang 2.4.1 69.72 ERROR --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 2.4.1 68.17 ERROR --no-stop-on-test-error
r-devel-macos-x86_64-clang 2.4.1 51.67 ERROR --no-stop-on-test-error
r-devel-windows-ix86+x86_64 2.4.1 15.00 117.00 132.00 ERROR
r-patched-linux-x86_64 2.4.1 1.92 29.44 31.36 OK
r-patched-solaris-sparc 2.4.1 311.40 OK
r-patched-solaris-x86 2.4.1 67.90 OK
r-release-linux-x86_64 2.4.1 1.88 29.74 31.62 OK
r-release-osx-x86_64-mavericks 2.4.1 WARN
r-release-windows-ix86+x86_64 2.4.1 11.00 58.00 69.00 OK
r-oldrel-windows-ix86+x86_64 2.4.1 13.00 80.00 93.00 OK

Check Details

Version: 2.4.1
Check: for unstated dependencies in ‘tests’
Result: WARN
    Warning: parse error in file ‘02_fromLongitudinalData.r’:
    invalid multibyte character in parser at line 1
    'library' or 'require' call not declared from: ‘codetools’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.4.1
Check: tests
Result: ERROR
     Running ‘01_testDistance3d.r’ [0s/0s]
    Running the tests in ‘tests/01_testDistance3d.r’ failed.
    Complete output:
     > source("../R/distance3d.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/distance3d.r': No such file or directory
     Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.4.1
Flags: --no-stop-on-test-error
Check: for unstated dependencies in ‘tests’
Result: WARN
    Warning: parse error in file '02_fromLongitudinalData.r':
    invalid multibyte character in parser at line 1
    'library' or 'require' call not declared from: ‘codetools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.4.1
Flags: --no-stop-on-test-error
Check: tests
Result: ERROR
     Running ‘01_testDistance3d.r’
     Running ‘02_fromLongitudinalData.r’
     Running ‘03_testClusterLongData3d.r’
     Running ‘04_testKml3d.r’
     Running ‘clean.r’
     Running ‘testClustering.data.r’
     Running ‘testClustering.r’
     Running ‘testFunction.r’
     Running ‘testKml.r’
     Running ‘testListPartition.r’
     Running ‘testLongData.data.r’
     Running ‘testLongData.r’
     Running ‘testParChoice.r’
     Running ‘testParKml.r’
    Running the tests in ‘tests/01_testDistance3d.r’ failed.
    Complete output:
     > source("../R/distance3d.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/distance3d.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/02_fromLongitudinalData.r’ failed.
    Complete output:
     > cat("### Jeux de donn<e9>es de longitudinalData ###\n")
     Error: invalid multibyte character in parser at line 1
     Execution halted
    Running the tests in ‘tests/03_testClusterLongData3d.r’ failed.
    Complete output:
     > source("../R/clusterLongData3d.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/clusterLongData3d.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/04_testKml3d.r’ failed.
    Complete output:
     > cat("############################################################
     + ######################### testKmL3d ########################
     + ############################################################")
     ############################################################
     ######################### testKmL3d ########################
     ############################################################>
     > source("../R/kml3d.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/kml3d.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testClustering.r’ failed.
    Complete output:
     > ### clusterization est une partition associ<e9> a une longData, ou une clusterizLongData.
     > ### cet objet ne devrait pouvoir exister que dans un cld
     >
     > source("testClustering.data.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> withVisible -> eval -> eval -> source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/clustering.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testClustering.data.r’ failed.
    Complete output:
     > source("../R/clustering.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/clustering.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testFunction.r’ failed.
    Complete output:
     > library(codetools)
     > cleanProg <- function(realResult,theoResult="",result=TRUE,tolerance=0){
     + functionNames <- strsplit(deparse(substitute(realResult)),"\\(")[[1]][1]
     + if(identical(theoResult,"")==FALSE){
     + if( isTRUE(all.equal( realResult , theoResult ))!=result ){
     + cat("WARNING(PreTest2) in ",functionNames,":",deparse(substitute(realResult)), " == ",theoResult," is not ",result,"\a\n\a")
     + }
     + }else{}
     + if(length(findGlobals(get(functionNames),FALSE)$variables) > tolerance){
     + cat("WARNIGS(detectGlobal) in ",functionNames,": These are the globals:",findGlobals(get(functionNames),FALSE)$variables,"\a\n")
     + }else{}
     + }
     >
     >
     > tryBug <- function(...){
     + res <- try(...)
     + if(class(res)!="try-error"){
     + stop("This line SHOULD give an error, whereas it does not !")
     + }else{}
     + return(invisible)
     + }
     >
     > source("../R/global.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/global.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testKml.r’ failed.
    Complete output:
     > source("../R/kml.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/kml.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testListPartition.r’ failed.
    Complete output:
     > source("../R/listPartition.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/listPartition.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testLongData.r’ failed.
    Complete output:
     > ### LongData contient des trajectoires de plusieurs variables et leur identifiant
     > ### Une trajectoire est une suite de numeric.
     > ### Les trajectoires pour n variables est un array en 3D :
     > ### - Chaque plan horizontal (premier dimension) est n trajectoires pour un individu
     > ### - Chaque plan vertical de coupe (deuxi<e8>me dimension) est un temps Ti
     > ### - Chaque plan vertical longitudinal (troisi<e8>me dimension) est une variable
     > ### Les autres variables
     > ### - idAll est l'ensemble de tous les identifiants
     > ### - idFewNA est l'ensemble des identifiants des trajectoires non exclues pour cause de manquantes
     > ### - time est le temps ou les mesures ont <e9>t<e9> faite.
     > ### - varName est les noms des variables.
     > ### - dimTraj est la dimension de la matrice
     > ### - maxNA est le nombre de NA tol<e9>rant avant exclusion de la trajectoire
     > ### - reverse contiennet les parametres permettant de restaurer les valeurs initiales des trajectoires.
     >
     >
     > source("testLongData.data.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> withVisible -> eval -> eval -> source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/longData.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testLongData.data.r’ failed.
    Complete output:
     > source("../R/longData.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/longData.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testParChoice.r’ failed.
    Complete output:
     > source("../R/parChoice.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/parChoice.r': No such file or directory
     Execution halted
    Running the tests in ‘tests/testParKml.r’ failed.
    Complete output:
     > source("../R/parKml.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/parKml.r': No such file or directory
     Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 2.4.1
Check: for unstated dependencies in ‘tests’
Result: WARN
    'library' or 'require' call not declared from: 'codetools'
Flavor: r-devel-windows-ix86+x86_64

Version: 2.4.1
Check: tests
Result: ERROR
     Running '01_testDistance3d.r' [1s]
    Running the tests in 'tests/01_testDistance3d.r' failed.
    Complete output:
     > source("../R/distance3d.r")
     Error in file(filename, "r", encoding = encoding) :
     cannot open the connection
     Calls: source -> file
     In addition: Warning message:
     In file(filename, "r", encoding = encoding) :
     cannot open file '../R/distance3d.r': No such file or directory
     Execution halted
Flavor: r-devel-windows-ix86+x86_64

Version: 2.4.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE
Flavor: r-release-osx-x86_64-mavericks

Version: 2.4.1
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 2.4.1
Check: S3 generic/method consistency
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    See section ‘Generic functions and methods’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.4.1
Check: replacement functions
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    The argument of a replacement function which corresponds to the right
    hand side must be named ‘value’.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.4.1
Check: foreign function calls
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    See chapter ‘System and foreign language interfaces’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.4.1
Check: R code for possible problems
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 2.4.1
Check: for missing documentation entries
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    All user-level objects in a package should have documentation entries.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.4.1
Check: for code/documentation mismatches
Result: WARN
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 2.4.1
Check: Rd \usage sections
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks