CRAN Package Check Results for Package labdsv

Last updated on 2015-07-07 23:47:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7-0 4.00 45.06 49.06 NOTE
r-devel-linux-x86_64-debian-gcc 1.7-0 4.02 44.55 48.57 NOTE
r-devel-linux-x86_64-fedora-clang 1.7-0 100.28 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7-0 92.33 NOTE
r-devel-osx-x86_64-clang 1.7-0 83.86 NOTE
r-devel-windows-ix86+x86_64 1.7-0 18.00 100.00 118.00 NOTE
r-patched-linux-x86_64 1.7-0 4.04 44.96 49.00 NOTE
r-patched-solaris-sparc 1.7-0 559.40 ERROR
r-patched-solaris-x86 1.7-0 304.50 NOTE
r-release-linux-x86_64 1.7-0 4.05 44.84 48.89 NOTE
r-release-osx-x86_64-mavericks 1.7-0 NOTE
r-release-windows-ix86+x86_64 1.7-0 22.00 95.00 117.00 OK
r-oldrel-windows-ix86+x86_64 1.7-0 19.00 165.00 184.00 OK

Check Details

Version: 1.7-0
Check: R code for possible problems
Result: NOTE
    abuocc: no visible global function definition for ‘plot’
    abuocc: no visible global function definition for ‘identify’
    bestnmds: no visible global function definition for ‘runif’
    chullord.nmds: no visible global function definition for ‘chull’
    chullord.nmds: no visible global function definition for ‘polygon’
    chullord.pca: no visible global function definition for ‘chull’
    chullord.pca: no visible global function definition for ‘polygon’
    chullord.pco: no visible global function definition for ‘chull’
    chullord.pco: no visible global function definition for ‘polygon’
    compspec : compspec.core: no visible global function definition for
     ‘quantile’
    dematrify: no visible global function definition for ‘write.table’
    density.nmds : densi: no visible global function definition for ‘chull’
    density.pco : densi: no visible global function definition for ‘chull’
    dga: no visible binding for global variable ‘binomial’
    dga: no visible global function definition for ‘contour’
    dga: no visible global function definition for ‘points’
    dga: no visible binding for global variable ‘poisson’
    dga: no visible global function definition for ‘quantile’
    disana: no visible global function definition for ‘plot’
    disana: no visible global function definition for ‘points’
    disana: no visible global function definition for ‘lines’
    disana: no visible global function definition for ‘identify’
    ellip.nmds: no visible global function definition for ‘chull’
    ellip.nmds: no visible global function definition for ‘lines’
    ellip.nmds: no visible global function definition for ‘predict’
    ellip.pco: no visible global function definition for ‘chull’
    ellip.pco: no visible global function definition for ‘lines’
    ellip.pco: no visible global function definition for ‘predict’
    envrtest: no visible global function definition for ‘plot’
    envrtest: no visible global function definition for ‘abline’
    envrtest: no visible global function definition for ‘text’
    euclidify: no visible global function definition for ‘as.dist’
    hilight.nmds: no visible global function definition for ‘plot’
    hilight.nmds: no visible global function definition for ‘points’
    hilight.pca: no visible global function definition for ‘plot’
    hilight.pca: no visible global function definition for ‘points’
    hilight.pco: no visible global function definition for ‘plot’
    hilight.pco: no visible global function definition for ‘points’
    metrify: no visible global function definition for ‘as.dist’
    nmds: no visible global function definition for ‘cmdscale’
    ordcomp: no visible global function definition for ‘as.dist’
    ordcomp: no visible global function definition for ‘dist’
    ordcomp: no visible global function definition for ‘plot’
    ordcomp: no visible global function definition for ‘text’
    ordcomp: no visible global function definition for ‘cor’
    orddist: no visible global function definition for ‘dist’
    ordpart.nmds: no visible global function definition for ‘locator’
    ordpart.nmds: no visible global function definition for ‘lines’
    ordpart.nmds: no visible global function definition for ‘points’
    ordpart.pca: no visible global function definition for ‘locator’
    ordpart.pca: no visible global function definition for ‘lines’
    ordpart.pca: no visible global function definition for ‘points’
    ordpart.pco: no visible global function definition for ‘locator’
    ordpart.pco: no visible global function definition for ‘lines’
    ordpart.pco: no visible global function definition for ‘points’
    ordtest: no visible global function definition for ‘dist’
    pca: no visible global function definition for ‘prcomp’
    pco: no visible global function definition for ‘cmdscale’
    plot.compspec: no visible global function definition for ‘plot’
    plot.compspec: no visible global function definition for ‘abline’
    plot.compspec: no visible global function definition for ‘lines’
    plot.compspec: no visible global function definition for ‘smooth’
    plot.compspec: no visible global function definition for ‘identify’
    plot.nmds: no visible global function definition for ‘plot’
    plot.pca: no visible global function definition for ‘plot’
    plot.pco: no visible global function definition for ‘plot’
    plot.thull: no visible global function definition for ‘rainbow’
    plot.thull: no visible global function definition for ‘image’
    plot.thull: no visible global function definition for ‘contour’
    plotid.nmds: no visible global function definition for ‘identify’
    plotid.pca: no visible global function definition for ‘identify’
    plotid.pco: no visible global function definition for ‘identify’
    points.nmds: no visible global function definition for ‘points’
    points.pca: no visible global function definition for ‘points’
    points.pco: no visible global function definition for ‘points’
    raretaxa: no visible global function definition for ‘plot’
    rnddist: no visible global function definition for ‘runif’
    rnddist: no visible global function definition for ‘as.dist’
    subset.dist: no visible global function definition for ‘as.dist’
    surf.nmds: no visible binding for global variable ‘gaussian’
    surf.nmds: no visible binding for global variable ‘binomial’
    surf.nmds: no visible global function definition for ‘chull’
    surf.nmds: no visible global function definition for ‘predict’
    surf.nmds: no visible global function definition for ‘contour’
    surf.pca: no visible binding for global variable ‘gaussian’
    surf.pca: no visible binding for global variable ‘binomial’
    surf.pca: no visible global function definition for ‘chull’
    surf.pca: no visible global function definition for ‘predict’
    surf.pca: no visible global function definition for ‘contour’
    surf.pco: no visible binding for global variable ‘gaussian’
    surf.pco: no visible binding for global variable ‘binomial’
    surf.pco: no visible global function definition for ‘chull’
    surf.pco: no visible global function definition for ‘predict’
    surf.pco: no visible global function definition for ‘contour’
    thull.nmds: no visible global function definition for ‘contour’
    thull.pco: no visible global function definition for ‘contour’
    varplot.pca: no visible global function definition for ‘barplot’
    Undefined global functions or variables:
     abline as.dist barplot binomial chull cmdscale contour cor dist
     gaussian identify image lines locator plot points poisson polygon
     prcomp predict quantile rainbow runif smooth text write.table
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.7-0
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘_gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-0
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘__gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 1.7-0
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘rand_’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.7-0
Check: examples
Result: ERROR
    Running examples in ‘labdsv-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: indval
    > ### Title: Dufrene-Legendre Indicator Species Analysis
    > ### Aliases: indval duleg indval.default indval.stride summary.indval
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > data(bryceveg) # returns a vegetation data.frame
    > dis.bc <- dsvdis(bryceveg,'bray/curtis') # returns a dissimilarity matrix
    > clust <- sample(1:5,nrow(bryceveg),replace=TRUE)
    > indval(bryceveg,clust)
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: .Fortran("duleg", as.double(as.matrix(x)), as.integer(numplt), as.integer(numspc), as.integer(factor(clustering)), as.integer(table(clustering)), as.integer(numcls), as.integer(numitr), relfrq = relfrq, relabu = relabu, indval = indval, pval = pval, indcls = indcls, maxcls = as.integer(maxcls), as.double(tmpfrq), as.double(tmpabu), as.integer(pclass), as.integer(tclass), errcod = as.integer(errcod), PACKAGE = "labdsv")
     2: indval.default(bryceveg, clust)
     3: indval(bryceveg, clust)
    aborting ...
Flavor: r-patched-solaris-sparc