CRAN Package Check Results for Package labdsv

Last updated on 2014-12-18 11:50:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.6-1 4.96 52.22 57.17 NOTE
r-devel-linux-x86_64-debian-gcc 1.6-1 4.69 50.38 55.07 NOTE
r-devel-linux-x86_64-fedora-clang 1.6-1 130.48 NOTE
r-devel-linux-x86_64-fedora-gcc 1.6-1 120.90 NOTE
r-devel-osx-x86_64-clang 1.6-1 108.77 NOTE
r-devel-windows-ix86+x86_64 1.6-1 27.00 105.00 132.00 NOTE
r-patched-linux-x86_64 1.6-1 5.14 54.44 59.58 NOTE
r-patched-solaris-sparc 1.6-1 586.90 ERROR
r-patched-solaris-x86 1.6-1 329.60 NOTE
r-release-linux-ix86 1.6-1 5.83 63.00 68.82 NOTE
r-release-linux-x86_64 1.6-1 4.79 53.09 57.88 NOTE
r-release-osx-x86_64-mavericks 1.6-1 OK
r-release-osx-x86_64-snowleopard 1.6-1 ERROR
r-release-windows-ix86+x86_64 1.6-1 19.00 102.00 121.00 NOTE
r-oldrel-windows-ix86+x86_64 1.6-1 17.00 105.00 122.00 OK

Check Details

Version: 1.6-1
Check: R code for possible problems
Result: NOTE
    rgl.nmds: no visible global function definition for ‘rgl.clear’
    rgl.nmds: no visible global function definition for ‘rgl.lines’
    rgl.nmds: no visible global function definition for ‘rgl.texts’
    rgl.nmds: no visible global function definition for ‘rgl.points’
    rgl.nmds: no visible global function definition for ‘rgl.spheres’
    rgl.pco: no visible global function definition for ‘rgl.clear’
    rgl.pco: no visible global function definition for ‘rgl.lines’
    rgl.pco: no visible global function definition for ‘rgl.texts’
    rgl.pco: no visible global function definition for ‘rgl.points’
    rgl.pco: no visible global function definition for ‘rgl.spheres’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.6-1
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘_gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64

Version: 1.6-1
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘__gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 1.6-1
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘rand_’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.6-1
Check: examples
Result: ERROR
    Running examples in ‘labdsv-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: indval
    > ### Title: Dufrene-Legendre Indicator Species Analysis
    > ### Aliases: indval duleg indval.default indval.stride summary.indval
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > data(bryceveg) # returns a vegetation data.frame
    > dis.bc <- dsvdis(bryceveg,'bray/curtis') # returns a dissimilarity matrix
    > clust <- sample(1:5,nrow(bryceveg),replace=TRUE)
    > indval(bryceveg,clust)
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: .Fortran("duleg", as.double(as.matrix(x)), as.integer(numplt), as.integer(numspc), as.integer(factor(clustering)), as.integer(table(clustering)), as.integer(numcls), as.integer(numitr), relfrq = relfrq, relabu = relabu, indval = indval, pval = pval, indcls = indcls, maxcls = as.integer(maxcls), as.double(tmpfrq), as.double(tmpabu), as.integer(pclass), as.integer(tclass), errcod = as.integer(errcod), PACKAGE = "labdsv")
     2: indval.default(bryceveg, clust)
     3: indval(bryceveg, clust)
    aborting ...
Flavor: r-patched-solaris-sparc

Version: 1.6-1
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard