CRAN Package Check Results for Package labdsv

Last updated on 2015-08-29 20:48:04.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7-0 4.04 43.97 48.01 NOTE
r-devel-linux-x86_64-debian-gcc 1.7-0 3.96 43.24 47.20 NOTE
r-devel-linux-x86_64-fedora-clang 1.7-0 98.62 NOTE
r-devel-linux-x86_64-fedora-gcc 1.7-0 98.57 NOTE
r-devel-osx-x86_64-clang 1.7-0 81.75 NOTE
r-devel-windows-ix86+x86_64 1.7-0 23.00 100.00 123.00 NOTE
r-patched-linux-x86_64 1.7-0 4.27 45.76 50.02 NOTE
r-patched-solaris-sparc 1.7-0 574.00 ERROR
r-patched-solaris-x86 1.7-0 306.60 NOTE
r-release-linux-x86_64 1.7-0 4.18 46.73 50.91 NOTE
r-release-osx-x86_64-mavericks 1.7-0 NOTE
r-release-windows-ix86+x86_64 1.7-0 19.00 146.00 165.00 OK
r-oldrel-windows-ix86+x86_64 1.7-0 25.00 162.00 187.00 OK

Check Details

Version: 1.7-0
Check: R code for possible problems
Result: NOTE
    abuocc: no visible global function definition for ‘plot’
    abuocc: no visible global function definition for ‘identify’
    bestnmds: no visible global function definition for ‘runif’
    chullord.nmds: no visible global function definition for ‘chull’
    chullord.nmds: no visible global function definition for ‘polygon’
    chullord.pca: no visible global function definition for ‘chull’
    chullord.pca: no visible global function definition for ‘polygon’
    chullord.pco: no visible global function definition for ‘chull’
    chullord.pco: no visible global function definition for ‘polygon’
    compspec : compspec.core: no visible global function definition for
     ‘quantile’
    dematrify: no visible global function definition for ‘write.table’
    density.nmds : densi: no visible global function definition for ‘chull’
    density.pco : densi: no visible global function definition for ‘chull’
    dga: no visible binding for global variable ‘binomial’
    dga: no visible global function definition for ‘contour’
    dga: no visible global function definition for ‘points’
    dga: no visible binding for global variable ‘poisson’
    dga: no visible global function definition for ‘quantile’
    disana: no visible global function definition for ‘plot’
    disana: no visible global function definition for ‘points’
    disana: no visible global function definition for ‘lines’
    disana: no visible global function definition for ‘identify’
    ellip.nmds: no visible global function definition for ‘chull’
    ellip.nmds: no visible global function definition for ‘lines’
    ellip.nmds: no visible global function definition for ‘predict’
    ellip.pco: no visible global function definition for ‘chull’
    ellip.pco: no visible global function definition for ‘lines’
    ellip.pco: no visible global function definition for ‘predict’
    envrtest: no visible global function definition for ‘plot’
    envrtest: no visible global function definition for ‘abline’
    envrtest: no visible global function definition for ‘text’
    euclidify: no visible global function definition for ‘as.dist’
    hilight.nmds: no visible global function definition for ‘plot’
    hilight.nmds: no visible global function definition for ‘points’
    hilight.pca: no visible global function definition for ‘plot’
    hilight.pca: no visible global function definition for ‘points’
    hilight.pco: no visible global function definition for ‘plot’
    hilight.pco: no visible global function definition for ‘points’
    metrify: no visible global function definition for ‘as.dist’
    nmds: no visible global function definition for ‘cmdscale’
    ordcomp: no visible global function definition for ‘as.dist’
    ordcomp: no visible global function definition for ‘dist’
    ordcomp: no visible global function definition for ‘plot’
    ordcomp: no visible global function definition for ‘text’
    ordcomp: no visible global function definition for ‘cor’
    orddist: no visible global function definition for ‘dist’
    ordpart.nmds: no visible global function definition for ‘locator’
    ordpart.nmds: no visible global function definition for ‘lines’
    ordpart.nmds: no visible global function definition for ‘points’
    ordpart.pca: no visible global function definition for ‘locator’
    ordpart.pca: no visible global function definition for ‘lines’
    ordpart.pca: no visible global function definition for ‘points’
    ordpart.pco: no visible global function definition for ‘locator’
    ordpart.pco: no visible global function definition for ‘lines’
    ordpart.pco: no visible global function definition for ‘points’
    ordtest: no visible global function definition for ‘dist’
    pca: no visible global function definition for ‘prcomp’
    pco: no visible global function definition for ‘cmdscale’
    plot.compspec: no visible global function definition for ‘plot’
    plot.compspec: no visible global function definition for ‘abline’
    plot.compspec: no visible global function definition for ‘lines’
    plot.compspec: no visible global function definition for ‘smooth’
    plot.compspec: no visible global function definition for ‘identify’
    plot.nmds: no visible global function definition for ‘plot’
    plot.pca: no visible global function definition for ‘plot’
    plot.pco: no visible global function definition for ‘plot’
    plot.thull: no visible global function definition for ‘rainbow’
    plot.thull: no visible global function definition for ‘image’
    plot.thull: no visible global function definition for ‘contour’
    plotid.nmds: no visible global function definition for ‘identify’
    plotid.pca: no visible global function definition for ‘identify’
    plotid.pco: no visible global function definition for ‘identify’
    points.nmds: no visible global function definition for ‘points’
    points.pca: no visible global function definition for ‘points’
    points.pco: no visible global function definition for ‘points’
    raretaxa: no visible global function definition for ‘plot’
    rnddist: no visible global function definition for ‘runif’
    rnddist: no visible global function definition for ‘as.dist’
    subset.dist: no visible global function definition for ‘as.dist’
    surf.nmds: no visible binding for global variable ‘gaussian’
    surf.nmds: no visible binding for global variable ‘binomial’
    surf.nmds: no visible global function definition for ‘chull’
    surf.nmds: no visible global function definition for ‘predict’
    surf.nmds: no visible global function definition for ‘contour’
    surf.pca: no visible binding for global variable ‘gaussian’
    surf.pca: no visible binding for global variable ‘binomial’
    surf.pca: no visible global function definition for ‘chull’
    surf.pca: no visible global function definition for ‘predict’
    surf.pca: no visible global function definition for ‘contour’
    surf.pco: no visible binding for global variable ‘gaussian’
    surf.pco: no visible binding for global variable ‘binomial’
    surf.pco: no visible global function definition for ‘chull’
    surf.pco: no visible global function definition for ‘predict’
    surf.pco: no visible global function definition for ‘contour’
    thull.nmds: no visible global function definition for ‘contour’
    thull.pco: no visible global function definition for ‘contour’
    varplot.pca: no visible global function definition for ‘barplot’
    Undefined global functions or variables:
     abline as.dist barplot binomial chull cmdscale contour cor dist
     gaussian identify image lines locator plot points poisson polygon
     prcomp predict quantile rainbow runif smooth text write.table
    Consider adding
     importFrom("grDevices", "chull", "rainbow")
     importFrom("graphics", "abline", "barplot", "contour", "identify",
     "image", "lines", "locator", "plot", "points", "polygon",
     "text")
     importFrom("stats", "as.dist", "binomial", "cmdscale", "cor", "dist",
     "gaussian", "poisson", "prcomp", "predict", "quantile",
     "runif", "smooth")
     importFrom("utils", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.7-0
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘_gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.7-0
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘__gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 1.7-0
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘rand_’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.7-0
Check: examples
Result: ERROR
    Running examples in ‘labdsv-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: indval
    > ### Title: Dufrene-Legendre Indicator Species Analysis
    > ### Aliases: indval duleg indval.default indval.stride summary.indval
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > data(bryceveg) # returns a vegetation data.frame
    > dis.bc <- dsvdis(bryceveg,'bray/curtis') # returns a dissimilarity matrix
    > clust <- sample(1:5,nrow(bryceveg),replace=TRUE)
    > indval(bryceveg,clust)
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: .Fortran("duleg", as.double(as.matrix(x)), as.integer(numplt), as.integer(numspc), as.integer(factor(clustering)), as.integer(table(clustering)), as.integer(numcls), as.integer(numitr), relfrq = relfrq, relabu = relabu, indval = indval, pval = pval, indcls = indcls, maxcls = as.integer(maxcls), as.double(tmpfrq), as.double(tmpabu), as.integer(pclass), as.integer(tclass), errcod = as.integer(errcod), PACKAGE = "labdsv")
     2: indval.default(bryceveg, clust)
     3: indval(bryceveg, clust)
    aborting ...
Flavor: r-patched-solaris-sparc