CRAN Package Check Results for Package labdsv

Last updated on 2015-01-31 22:47:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.6-1 4.33 44.20 48.53 NOTE
r-devel-linux-x86_64-debian-gcc 1.6-1 3.92 43.28 47.20 NOTE
r-devel-linux-x86_64-fedora-clang 1.6-1 132.01 NOTE
r-devel-linux-x86_64-fedora-gcc 1.6-1 123.66 NOTE
r-devel-osx-x86_64-clang 1.6-1 107.84 NOTE
r-devel-windows-ix86+x86_64 1.6-1 22.00 87.00 109.00 NOTE
r-patched-linux-x86_64 1.6-1 4.69 54.14 58.83 NOTE
r-patched-solaris-sparc 1.6-1 661.40 ERROR
r-patched-solaris-x86 1.6-1 329.00 NOTE
r-release-linux-ix86 1.6-1 5.85 64.10 69.95 NOTE
r-release-linux-x86_64 1.6-1 4.97 54.06 59.03 NOTE
r-release-osx-x86_64-mavericks 1.6-1 NOTE
r-release-osx-x86_64-snowleopard 1.6-1 ERROR
r-release-windows-ix86+x86_64 1.6-1 18.00 108.00 126.00 NOTE
r-oldrel-windows-ix86+x86_64 1.6-1 18.00 100.00 118.00 OK

Check Details

Version: 1.6-1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘rgl’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.6-1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     chullord.nmds chullord.pca chullord.pco density.nmds density.pco
     hilight.nmds hilight.pca hilight.pco indval.default indval.stride
     ordpart.nmds ordpart.pca ordpart.pco plotid.nmds plotid.pca
     plotid.pco surf.nmds surf.pca surf.pco thull.nmds thull.pco
     summary.indval summary.pca plot.indspc plot.nmds plot.pca plot.pco
     plot.thull points.nmds points.pca points.pco
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.6-1
Check: R code for possible problems
Result: NOTE
    rgl.nmds: no visible global function definition for ‘rgl.clear’
    rgl.nmds: no visible global function definition for ‘rgl.lines’
    rgl.nmds: no visible global function definition for ‘rgl.texts’
    rgl.nmds: no visible global function definition for ‘rgl.points’
    rgl.nmds: no visible global function definition for ‘rgl.spheres’
    rgl.pco: no visible global function definition for ‘rgl.clear’
    rgl.pco: no visible global function definition for ‘rgl.lines’
    rgl.pco: no visible global function definition for ‘rgl.texts’
    rgl.pco: no visible global function definition for ‘rgl.points’
    rgl.pco: no visible global function definition for ‘rgl.spheres’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.6-1
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘_gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64

Version: 1.6-1
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘__gfortran_rand’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 1.6-1
Check: compiled code
Result: NOTE
    File ‘labdsv/libs/labdsv.so’:
     Found ‘rand_’, possibly from ‘rand’ (Fortran)
     Object: ‘indval.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the system RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.6-1
Check: examples
Result: ERROR
    Running examples in ‘labdsv-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: indval
    > ### Title: Dufrene-Legendre Indicator Species Analysis
    > ### Aliases: indval duleg indval.default indval.stride summary.indval
    > ### Keywords: cluster
    >
    > ### ** Examples
    >
    > data(bryceveg) # returns a vegetation data.frame
    > dis.bc <- dsvdis(bryceveg,'bray/curtis') # returns a dissimilarity matrix
    > clust <- sample(1:5,nrow(bryceveg),replace=TRUE)
    > indval(bryceveg,clust)
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: .Fortran("duleg", as.double(as.matrix(x)), as.integer(numplt), as.integer(numspc), as.integer(factor(clustering)), as.integer(table(clustering)), as.integer(numcls), as.integer(numitr), relfrq = relfrq, relabu = relabu, indval = indval, pval = pval, indcls = indcls, maxcls = as.integer(maxcls), as.double(tmpfrq), as.double(tmpabu), as.integer(pclass), as.integer(tclass), errcod = as.integer(errcod), PACKAGE = "labdsv")
     2: indval.default(bryceveg, clust)
     3: indval(bryceveg, clust)
    aborting ...
Flavor: r-patched-solaris-sparc

Version: 1.6-1
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard