CRAN Package Check Results for Package languageR

Last updated on 2015-05-22 13:46:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.1 3.11 25.74 28.85 NOTE
r-devel-linux-x86_64-debian-gcc 1.4.1 3.02 25.46 28.48 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4.1 54.00 NOTE
r-devel-osx-x86_64-clang 1.4.1 55.99 NOTE
r-devel-windows-ix86+x86_64 1.4.1 13.00 45.00 58.00 NOTE
r-patched-linux-x86_64 1.4.1 3.11 25.19 28.30 NOTE
r-patched-solaris-sparc 1.4.1 347.40 NOTE
r-patched-solaris-x86 1.4.1 73.10 NOTE
r-release-linux-x86_64 1.4.1 3.38 26.22 29.59 NOTE
r-release-osx-x86_64-mavericks 1.4.1 NOTE
r-release-osx-x86_64-snowleopard 1.4.1 ERROR
r-release-windows-ix86+x86_64 1.4.1 11.00 44.00 55.00 NOTE
r-oldrel-windows-ix86+x86_64 1.4.1 12.00 41.00 53.00 NOTE

Check Details

Version: 1.4.1
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Title field: should not end in a period.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.4.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘MASS’ ‘lattice’ ‘lme4’ ‘rms’ ‘zipfR’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     head.growth tail.growth
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.4.1
Check: R code for possible problems
Result: NOTE
    acf.fnc: no visible global function definition for ‘xyplot’
    acf.fnc : <anonymous>: no visible global function definition for
     ‘panel.abline’
    acf.fnc : <anonymous>: no visible global function definition for
     ‘panel.number’
    acf.fnc : <anonymous>: no visible global function definition for
     ‘panel.xyplot’
    acf.fnc: no visible global function definition for ‘strip.custom’
    compare.richness.fnc: no visible global function definition for ‘N’
    compare.richness.fnc: no visible global function definition for ‘lnre’
    compare.richness.fnc: no visible global function definition for ‘VV’
    compare.richness.fnc: no visible global function definition for ‘VVm’
    compare.richness.fnc: no visible global function definition for ‘V’
    compare.richness.fnc: no visible global function definition for ‘Vm’
    growth.fnc: no visible binding for global variable ‘alice’
    growth2vgc.fnc: no visible global function definition for ‘vgc’
    lmerPlotInt.fnc: no visible global function definition for ‘isLMM’
    lmerPlotInt.fnc: no visible global function definition for ‘isGLMM’
    lmerPlotInt.fnc: no visible global function definition for ‘fixef’
    makeDefaultMatrix.fnc: no visible global function definition for
     ‘fixef’
    mvrnormplot.fnc: no visible global function definition for ‘mvrnorm’
    plotLMER.fnc: no visible global function definition for ‘ranef’
    plotlogistic.fit.fnc: no visible global function definition for ‘cut2’
    plotlogistic.fit.fnc: no visible global function definition for
     ‘equal.count’
    preparePredictor.fnc: no visible global function definition for ‘fixef’
    preparePredictor.fnc: no visible global function definition for ‘ranef’
    simulateLatinsquare.fnc: no visible global function definition for
     ‘lmer’
    simulateLatinsquare.fnc: no visible global function definition for
     ‘ranef’
    simulateLatinsquare.fnc: no visible global function definition for
     ‘fixef’
    simulateQuasif.fnc: no visible global function definition for ‘lmer’
    simulateQuasif.fnc: no visible global function definition for ‘mvrnorm’
    simulateQuasif.fnc: no visible global function definition for ‘ranef’
    simulateQuasif.fnc: no visible global function definition for ‘fixef’
    simulateRegression.fnc: no visible global function definition for
     ‘lmer’
    simulateRegression.fnc: no visible global function definition for
     ‘VarCorr’
    simulateRegression.fnc: no visible global function definition for
     ‘lmList’
    text2spc.fnc: no visible global function definition for ‘spc’
    xylowess.fnc: no visible global function definition for ‘xyplot’
    xylowess.fnc : <anonymous>: no visible global function definition for
     ‘panel.grid’
    xylowess.fnc : <anonymous>: no visible global function definition for
     ‘panel.xyplot’
    xylowess.fnc : <anonymous>: no visible global function definition for
     ‘panel.loess’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘rms’ ‘Hmisc’ ‘multcomp’ ‘lmerTest’
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.4.1
Check: examples
Result: ERROR
    Running examples in ‘languageR-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: durationsOnt
    > ### Title: Durational measurements on the Dutch prefix ont-
    > ### Aliases: durationsOnt
    > ### Keywords: datasets
    >
    > ### ** Examples
    >
    > data(durationsOnt)
    >
    > ###### modeling the duration of the prefix
    >
    > prefix.lm = lm(DurationOfPrefix ~ (YearOfBirth + SpeechRate) * Frequency,
    + data = durationsOnt)
    > summary(prefix.lm)
    
    Call:
    lm(formula = DurationOfPrefix ~ (YearOfBirth + SpeechRate) *
     Frequency, data = durationsOnt)
    
    Residuals:
     Min 1Q Median 3Q Max
    -0.099022 -0.023386 0.000158 0.026762 0.080279
    
    Coefficients:
     Estimate Std. Error t value Pr(>|t|)
    (Intercept) 0.2553451 0.0345126 7.399 5.20e-11 ***
    YearOfBirth -0.0018550 0.0004437 -4.181 6.42e-05 ***
    SpeechRate 0.0022573 0.0054251 0.416 0.67828
    Frequency -0.0097943 0.0106787 -0.917 0.36135
    YearOfBirth:Frequency 0.0004374 0.0001428 3.063 0.00284 **
    SpeechRate:Frequency -0.0032922 0.0018223 -1.807 0.07395 .
    ---
    Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
    
    Residual standard error: 0.03532 on 96 degrees of freedom
    Multiple R-squared: 0.221, Adjusted R-squared: 0.1804
    F-statistic: 5.446 on 5 and 96 DF, p-value: 0.0001872
    
    >
    > # ---- model criticism
    >
    > plot(prefix.lm)
    > outliers = c(36, 35, 17, 72)
    > prefix.lm = lm(DurationOfPrefix ~ (YearOfBirth + SpeechRate) * Frequency,
    + data = durationsOnt[-outliers,])
    > summary(prefix.lm)
    
    Call:
    lm(formula = DurationOfPrefix ~ (YearOfBirth + SpeechRate) *
     Frequency, data = durationsOnt[-outliers, ])
    
    Residuals:
     Min 1Q Median 3Q Max
    -0.098553 -0.025442 -0.000857 0.026944 0.081562
    
    Coefficients:
     Estimate Std. Error t value Pr(>|t|)
    (Intercept) 0.2517499 0.0350307 7.187 1.71e-10 ***
    YearOfBirth -0.0018584 0.0004511 -4.119 8.29e-05 ***
    SpeechRate 0.0029918 0.0054993 0.544 0.58773
    Frequency -0.0080787 0.0110724 -0.730 0.46747
    YearOfBirth:Frequency 0.0004433 0.0001456 3.045 0.00304 **
    SpeechRate:Frequency -0.0037299 0.0018739 -1.990 0.04951 *
    ---
    Signif. codes: 0 ‘***’ 0.001 ‘**’ 0.01 ‘*’ 0.05 ‘.’ 0.1 ‘ ’ 1
    
    Residual standard error: 0.03556 on 92 degrees of freedom
    Multiple R-squared: 0.2291, Adjusted R-squared: 0.1872
    F-statistic: 5.468 on 5 and 92 DF, p-value: 0.0001888
    
    >
    > ###### modeling the presence of the /t/
    >
    > library(rms)
    Error in library(rms) : there is no package called ‘rms’
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard