CRAN Package Check Results for Package laser

Last updated on 2015-07-31 14:48:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4-1 1.39 22.42 23.81 NOTE
r-devel-linux-x86_64-debian-gcc 2.4-1 1.65 22.58 24.22 NOTE
r-devel-linux-x86_64-fedora-clang 2.4-1 46.84 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4-1 45.71 NOTE
r-devel-osx-x86_64-clang 2.4-1 43.26 NOTE
r-devel-windows-ix86+x86_64 2.4-1 10.00 39.00 49.00 NOTE
r-patched-linux-x86_64 2.4-1 1.29 22.77 24.06 NOTE
r-patched-solaris-sparc 2.4-1 285.10 NOTE
r-patched-solaris-x86 2.4-1 64.70 NOTE
r-release-linux-x86_64 2.4-1 1.30 22.32 23.62 NOTE
r-release-osx-x86_64-mavericks 2.4-1 NOTE
r-release-windows-ix86+x86_64 2.4-1 7.00 38.00 45.00 NOTE
r-oldrel-windows-ix86+x86_64 2.4-1 9.00 58.00 67.00 NOTE

Check Details

Version: 2.4-1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘ape’ ‘geiger’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.4-1
Check: R code for possible problems
Result: NOTE
    DDL: no visible global function definition for ‘nlm’
    DDX: no visible global function definition for ‘nlm’
    bd: no visible global function definition for ‘optim’
    birthdeathSim: no visible global function definition for ‘sim.bdtree’
    birthdeathSim: no visible binding for global variable ‘drop.tip’
    birthdeathSim : fx: no visible global function definition for
     ‘branching.times’
    fitBOTHVAR: no visible global function definition for ‘optim’
    fitEXVAR: no visible global function definition for ‘optim’
    fitSPVAR: no visible global function definition for ‘optim’
    gamStat: no visible global function definition for ‘pnorm’
    getBtimes: no visible global function definition for ‘read.tree’
    getBtimes: no visible global function definition for ‘is.ultrametric’
    getBtimes: no visible global function definition for ‘branching.times’
    getBtimes.batch : btfx: no visible global function definition for
     ‘branching.times’
    getBtimes.batch: no visible global function definition for ‘read.tree’
    getBtimes.batch: no visible binding for global variable
     ‘branching.times’
    lambda.stem.ml: no visible global function definition for ‘nlm’
    mccrTest: no visible global function definition for ‘sim.bdtree’
    mccrTest: no visible global function definition for ‘drop.tip’
    mccrTest: no visible global function definition for ‘read.tree’
    mccrTest: no visible binding for global variable ‘gammaStat’
    mccrTest: no visible global function definition for ‘quantile’
    pTt.BOTHVAR: no visible global function definition for ‘integrate’
    pTt.EXVAR: no visible global function definition for ‘integrate’
    pTt.SPVAR: no visible global function definition for ‘integrate’
    plotLtt: no visible global function definition for ‘plot’
    plotNodeNumbers.phylo: no visible global function definition for
     ‘plot.phylo’
    plotRate: no visible global function definition for ‘plot.new’
    plotRate: no visible global function definition for ‘plot.window’
    plotRate: no visible global function definition for ‘lines’
    plotRate: no visible global function definition for ‘axis’
    yuleSim: no visible global function definition for ‘rexp’
    Undefined global functions or variables:
     axis branching.times drop.tip gammaStat integrate is.ultrametric
     lines nlm optim plot plot.new plot.phylo plot.window pnorm quantile
     read.tree rexp sim.bdtree
    Consider adding
     importFrom("graphics", "axis", "lines", "plot", "plot.new",
     "plot.window")
     importFrom("stats", "integrate", "nlm", "optim", "pnorm", "quantile",
     "rexp")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.4-1
Check: R code for possible problems
Result: NOTE
    birthdeathSim: no visible global function definition for ‘sim.bdtree’
    birthdeathSim: no visible binding for global variable ‘drop.tip’
    birthdeathSim : fx: no visible global function definition for
     ‘branching.times’
    getBtimes: no visible global function definition for ‘read.tree’
    getBtimes: no visible global function definition for ‘is.ultrametric’
    getBtimes: no visible global function definition for ‘branching.times’
    getBtimes.batch : btfx: no visible global function definition for
     ‘branching.times’
    getBtimes.batch: no visible global function definition for ‘read.tree’
    getBtimes.batch: no visible binding for global variable
     ‘branching.times’
    mccrTest: no visible global function definition for ‘sim.bdtree’
    mccrTest: no visible global function definition for ‘drop.tip’
    mccrTest: no visible global function definition for ‘read.tree’
    mccrTest: no visible binding for global variable ‘gammaStat’
    plotNodeNumbers.phylo: no visible global function definition for
     ‘plot.phylo’
    Undefined global functions or variables:
     branching.times drop.tip gammaStat is.ultrametric plot.phylo
     read.tree sim.bdtree
Flavor: r-devel-osx-x86_64-clang

Version: 2.4-1
Check: R code for possible problems
Result: NOTE
    birthdeathSim: no visible global function definition for ‘sim.bdtree’
    birthdeathSim: no visible binding for global variable ‘drop.tip’
    birthdeathSim : fx: no visible global function definition for
     ‘branching.times’
    getBtimes: no visible global function definition for ‘read.tree’
    getBtimes: no visible global function definition for ‘is.ultrametric’
    getBtimes: no visible global function definition for ‘branching.times’
    getBtimes.batch : btfx: no visible global function definition for
     ‘branching.times’
    getBtimes.batch: no visible global function definition for ‘read.tree’
    getBtimes.batch: no visible binding for global variable
     ‘branching.times’
    mccrTest: no visible global function definition for ‘sim.bdtree’
    mccrTest: no visible global function definition for ‘drop.tip’
    mccrTest: no visible global function definition for ‘read.tree’
    mccrTest: no visible binding for global variable ‘gammaStat’
    plotNodeNumbers.phylo: no visible global function definition for
     ‘plot.phylo’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64