CRAN Package Check Results for Package laser

Last updated on 2015-07-03 07:48:02.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.4-1 1.55 22.71 24.26 NOTE
r-devel-linux-x86_64-debian-gcc 2.4-1 1.55 21.32 22.87 NOTE
r-devel-linux-x86_64-fedora-clang 2.4-1 44.99 NOTE
r-devel-linux-x86_64-fedora-gcc 2.4-1 43.21 NOTE
r-devel-osx-x86_64-clang 2.4-1 41.66 NOTE
r-devel-windows-ix86+x86_64 2.4-1 5.00 38.00 43.00 NOTE
r-patched-linux-x86_64 2.4-1 1.28 21.78 23.06 NOTE
r-patched-solaris-sparc 2.4-1 275.40 NOTE
r-patched-solaris-x86 2.4-1 62.20 NOTE
r-release-linux-x86_64 2.4-1 1.24 22.96 24.20 NOTE
r-release-osx-x86_64-mavericks 2.4-1 NOTE
r-release-windows-ix86+x86_64 2.4-1 4.00 38.00 42.00 NOTE
r-oldrel-windows-ix86+x86_64 2.4-1 9.00 47.00 56.00 NOTE

Check Details

Version: 2.4-1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘ape’ ‘geiger’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.4-1
Check: R code for possible problems
Result: NOTE
    DDL: no visible global function definition for ‘nlm’
    DDX: no visible global function definition for ‘nlm’
    bd: no visible global function definition for ‘optim’
    birthdeathSim: no visible global function definition for ‘sim.bdtree’
    birthdeathSim: no visible binding for global variable ‘drop.tip’
    birthdeathSim : fx: no visible global function definition for
     ‘branching.times’
    fitBOTHVAR: no visible global function definition for ‘optim’
    fitEXVAR: no visible global function definition for ‘optim’
    fitSPVAR: no visible global function definition for ‘optim’
    gamStat: no visible global function definition for ‘pnorm’
    getBtimes: no visible global function definition for ‘read.tree’
    getBtimes: no visible global function definition for ‘is.ultrametric’
    getBtimes: no visible global function definition for ‘branching.times’
    getBtimes.batch : btfx: no visible global function definition for
     ‘branching.times’
    getBtimes.batch: no visible global function definition for ‘read.tree’
    getBtimes.batch: no visible binding for global variable
     ‘branching.times’
    lambda.stem.ml: no visible global function definition for ‘nlm’
    mccrTest: no visible global function definition for ‘sim.bdtree’
    mccrTest: no visible global function definition for ‘drop.tip’
    mccrTest: no visible global function definition for ‘read.tree’
    mccrTest: no visible binding for global variable ‘gammaStat’
    mccrTest: no visible global function definition for ‘quantile’
    pTt.BOTHVAR: no visible global function definition for ‘integrate’
    pTt.EXVAR: no visible global function definition for ‘integrate’
    pTt.SPVAR: no visible global function definition for ‘integrate’
    plotLtt: no visible global function definition for ‘plot’
    plotNodeNumbers.phylo: no visible global function definition for
     ‘plot.phylo’
    plotRate: no visible global function definition for ‘plot.new’
    plotRate: no visible global function definition for ‘plot.window’
    plotRate: no visible global function definition for ‘lines’
    plotRate: no visible global function definition for ‘axis’
    yuleSim: no visible global function definition for ‘rexp’
    Undefined global functions or variables:
     axis branching.times drop.tip gammaStat integrate is.ultrametric
     lines nlm optim plot plot.new plot.phylo plot.window pnorm quantile
     read.tree rexp sim.bdtree
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.4-1
Check: R code for possible problems
Result: NOTE
    birthdeathSim: no visible global function definition for ‘sim.bdtree’
    birthdeathSim: no visible binding for global variable ‘drop.tip’
    birthdeathSim : fx: no visible global function definition for
     ‘branching.times’
    getBtimes: no visible global function definition for ‘read.tree’
    getBtimes: no visible global function definition for ‘is.ultrametric’
    getBtimes: no visible global function definition for ‘branching.times’
    getBtimes.batch : btfx: no visible global function definition for
     ‘branching.times’
    getBtimes.batch: no visible global function definition for ‘read.tree’
    getBtimes.batch: no visible binding for global variable
     ‘branching.times’
    mccrTest: no visible global function definition for ‘sim.bdtree’
    mccrTest: no visible global function definition for ‘drop.tip’
    mccrTest: no visible global function definition for ‘read.tree’
    mccrTest: no visible binding for global variable ‘gammaStat’
    plotNodeNumbers.phylo: no visible global function definition for
     ‘plot.phylo’
    Undefined global functions or variables:
     branching.times drop.tip gammaStat is.ultrametric plot.phylo
     read.tree sim.bdtree
Flavor: r-devel-osx-x86_64-clang

Version: 2.4-1
Check: R code for possible problems
Result: NOTE
    birthdeathSim: no visible global function definition for ‘sim.bdtree’
    birthdeathSim: no visible binding for global variable ‘drop.tip’
    birthdeathSim : fx: no visible global function definition for
     ‘branching.times’
    getBtimes: no visible global function definition for ‘read.tree’
    getBtimes: no visible global function definition for ‘is.ultrametric’
    getBtimes: no visible global function definition for ‘branching.times’
    getBtimes.batch : btfx: no visible global function definition for
     ‘branching.times’
    getBtimes.batch: no visible global function definition for ‘read.tree’
    getBtimes.batch: no visible binding for global variable
     ‘branching.times’
    mccrTest: no visible global function definition for ‘sim.bdtree’
    mccrTest: no visible global function definition for ‘drop.tip’
    mccrTest: no visible global function definition for ‘read.tree’
    mccrTest: no visible binding for global variable ‘gammaStat’
    plotNodeNumbers.phylo: no visible global function definition for
     ‘plot.phylo’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64