CRAN Package Check Results for Package ldlasso

Last updated on 2016-12-10 12:53:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.2 1.14 17.77 18.91 NOTE
r-devel-linux-x86_64-debian-gcc 3.2 1.17 17.68 18.85 NOTE
r-devel-linux-x86_64-fedora-clang 3.2 36.19 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 3.2 33.53 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 3.2 29.32 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 3.2 5.00 61.00 66.00 NOTE
r-patched-linux-x86_64 3.2 1.04 16.16 17.20 NOTE
r-patched-solaris-sparc 3.2 207.20 NOTE
r-patched-solaris-x86 3.2 41.80 NOTE
r-release-linux-x86_64 3.2 1.10 15.90 17.00 NOTE
r-release-osx-x86_64-mavericks 3.2 NOTE
r-release-windows-ix86+x86_64 3.2 5.00 35.00 40.00 NOTE
r-oldrel-windows-ix86+x86_64 3.2 6.00 33.00 39.00 NOTE

Check Details

Version: 3.2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 3.2
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.2
Check: R code for possible problems
Result: NOTE
    get.cp: no visible global function definition for ‘cov’
    heatmap: no visible global function definition for ‘image’
    heatmap: no visible global function definition for ‘grey’
    heatmap: no visible global function definition for ‘abline’
    heatmap: no visible global function definition for ‘axis’
    heatmap: no visible global function definition for ‘box’
    ld_lasso: no visible global function definition for ‘cor’
    ld_lasso_method: no visible global function definition for ‘pchisq’
    plot_beta: no visible global function definition for ‘plot’
    plot_beta: no visible global function definition for ‘lines’
    plot_ldlasso: no visible global function definition for ‘par’
    plot_ldlasso: no visible global function definition for ‘plot’
    plot_ldlasso: no visible global function definition for ‘lines’
    plot_ldlasso: no visible global function definition for ‘points’
    trace.plot: no visible global function definition for ‘plot’
    trace.plot: no visible global function definition for ‘lines’
    trace.plot: no visible global function definition for ‘points’
    Undefined global functions or variables:
     abline axis box cor cov grey image lines par pchisq plot points
    Consider adding
     importFrom("grDevices", "grey")
     importFrom("graphics", "abline", "axis", "box", "image", "lines",
     "par", "plot", "points")
     importFrom("stats", "cor", "cov", "pchisq")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 3.2
Check: Rd line widths
Result: NOTE
    Rd file 'get.cp.Rd':
     \usage lines wider than 90 characters:
     get.cp(s2low, s2high, s2.vec.length, block.obj, Xa = NA, Y = NA, s1, r2.cut, block.cood, B = 20)
    
    Rd file 'ld_lasso_method.Rd':
     \usage lines wider than 90 characters:
     maxcol = 5e3, p.frac = 0.10, B = 5, s2low = 5e-3, s2high = 5e1, s2.vec.length = 4, null = FALSE)
    
    Rd file 'p0tos1.Rd':
     \usage lines wider than 90 characters:
     p0tos1(p0, block.obj, Xa = NA, Y = NA, r2.cut = 0.01, s1high, s1low, max.iter = 100, tol = 0.1)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 3.2
Flags: --no-stop-on-test-error
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 3.2
Flags: --no-stop-on-test-error
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.2
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    get.cp: no visible global function definition for ‘cov’
    heatmap: no visible global function definition for ‘image’
    heatmap: no visible global function definition for ‘grey’
    heatmap: no visible global function definition for ‘abline’
    heatmap: no visible global function definition for ‘axis’
    heatmap: no visible global function definition for ‘box’
    ld_lasso: no visible global function definition for ‘cor’
    ld_lasso_method: no visible global function definition for ‘pchisq’
    plot_beta: no visible global function definition for ‘plot’
    plot_beta: no visible global function definition for ‘lines’
    plot_ldlasso: no visible global function definition for ‘par’
    plot_ldlasso: no visible global function definition for ‘plot’
    plot_ldlasso: no visible global function definition for ‘lines’
    plot_ldlasso: no visible global function definition for ‘points’
    trace.plot: no visible global function definition for ‘plot’
    trace.plot: no visible global function definition for ‘lines’
    trace.plot: no visible global function definition for ‘points’
    Undefined global functions or variables:
     abline axis box cor cov grey image lines par pchisq plot points
    Consider adding
     importFrom("grDevices", "grey")
     importFrom("graphics", "abline", "axis", "box", "image", "lines",
     "par", "plot", "points")
     importFrom("stats", "cor", "cov", "pchisq")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang

Version: 3.2
Flags: --no-stop-on-test-error
Check: Rd line widths
Result: NOTE
    Rd file 'get.cp.Rd':
     \usage lines wider than 90 characters:
     get.cp(s2low, s2high, s2.vec.length, block.obj, Xa = NA, Y = NA, s1, r2.cut, block.cood, B = 20)
    
    Rd file 'ld_lasso_method.Rd':
     \usage lines wider than 90 characters:
     maxcol = 5e3, p.frac = 0.10, B = 5, s2low = 5e-3, s2high = 5e1, s2.vec.length = 4, null = FALSE)
    
    Rd file 'p0tos1.Rd':
     \usage lines wider than 90 characters:
     p0tos1(p0, block.obj, Xa = NA, Y = NA, r2.cut = 0.01, s1high, s1low, max.iter = 100, tol = 0.1)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc