CRAN Package Check Results for Package linkcomm

Last updated on 2015-09-01 09:47:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-11 9.34 31.83 41.18 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-11 12.81 32.66 45.47 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-11 98.78 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-11 85.93 NOTE
r-devel-osx-x86_64-clang 1.0-11 74.16 OK
r-devel-windows-ix86+x86_64 1.0-11 59.00 86.00 145.00 NOTE
r-patched-linux-x86_64 1.0-11 12.69 32.36 45.06 OK
r-patched-solaris-sparc 1.0-11 2377.70 ERROR
r-patched-solaris-x86 1.0-11 134.50 OK
r-release-linux-x86_64 1.0-11 13.00 36.09 49.09 OK
r-release-osx-x86_64-mavericks 1.0-11 OK
r-release-windows-ix86+x86_64 1.0-11 53.00 85.00 138.00 OK
r-oldrel-windows-ix86+x86_64 1.0-11 58.00 96.00 154.00 OK

Check Details

Version: 1.0-11
Check: R code for possible problems
Result: NOTE
    .COL: no visible global function definition for ‘is.leaf’
    corLinkcommCentrality: no visible global function definition for ‘lm’
    corLinkcommCentrality: no visible global function definition for
     ‘abline’
    corLinkcommCentrality: no visible global function definition for ‘cor’
    cutDendrogramAt: no visible global function definition for
     ‘as.dendrogram’
    cutDendrogramAt: no visible global function definition for
     ‘colorRampPalette’
    cutDendrogramAt: no visible global function definition for ‘dendrapply’
    cutDendrogramAt: no visible global function definition for ‘abline’
    cutDendrogramAt: no visible global function definition for ‘mtext’
    getClusterRelatedness: no visible global function definition for
     ‘as.dist’
    getClusterRelatedness: no visible global function definition for
     ‘hclust’
    getLinkCommunities: no visible global function definition for ‘as.dist’
    getLinkCommunities: no visible global function definition for ‘hclust’
    getLinkCommunities: no visible global function definition for ‘par’
    getLinkCommunities: no visible global function definition for ‘abline’
    getLinkCommunities: no visible global function definition for ‘lines’
    layout.spencer.circle: no visible global function definition for
     ‘runif’
    meta.communities: no visible global function definition for ‘hclust’
    meta.communities: no visible global function definition for ‘as.dist’
    plotLinkCommDend: no visible global function definition for
     ‘as.dendrogram’
    plotLinkCommDend: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommDend: no visible global function definition for
     ‘dendrapply’
    plotLinkCommDend: no visible global function definition for ‘plot’
    plotLinkCommDend: no visible global function definition for ‘abline’
    plotLinkCommDend: no visible global function definition for ‘mtext’
    plotLinkCommGraph: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommGraph: no visible global function definition for ‘dev.hold’
    plotLinkCommGraph: no visible global function definition for
     ‘dev.flush’
    plotLinkCommGraph: no visible global function definition for ‘par’
    plotLinkCommGraph: no visible global function definition for ‘plot’
    plotLinkCommGraph: no visible global function definition for ‘polygon’
    plotLinkCommGraph: no visible global function definition for ‘text’
    plotLinkCommGraph: no visible global function definition for ‘points’
    plotLinkCommMembers: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommSumm: no visible global function definition for ‘par’
    plotLinkCommSumm: no visible global function definition for
     ‘as.dendrogram’
    plotLinkCommSumm: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommSumm: no visible global function definition for
     ‘dendrapply’
    plotLinkCommSumm: no visible global function definition for ‘plot.new’
    plotLinkCommSumm: no visible global function definition for ‘plot’
    plotLinkCommSummComm: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommSummComm: no visible global function definition for
     ‘barplot’
    plotLinkCommSummComm: no visible global function definition for
     ‘abline’
    plotOCGraph: no visible global function definition for
     ‘colorRampPalette’
    plotOCGraph: no visible global function definition for ‘dev.hold’
    plotOCGraph: no visible global function definition for ‘dev.flush’
    plotOCGraph: no visible global function definition for ‘plot’
    plotOCGraph: no visible global function definition for ‘polygon’
    plotOCGraph: no visible global function definition for ‘text’
    Undefined global functions or variables:
     abline as.dendrogram as.dist barplot colorRampPalette cor dendrapply
     dev.flush dev.hold hclust is.leaf lines lm mtext par plot plot.new
     points polygon runif text
    Consider adding
     importFrom("grDevices", "colorRampPalette", "dev.flush", "dev.hold")
     importFrom("graphics", "abline", "barplot", "lines", "mtext", "par",
     "plot", "plot.new", "points", "polygon", "text")
     importFrom("stats", "as.dendrogram", "as.dist", "cor", "dendrapply",
     "hclust", "is.leaf", "lm", "runif")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0-11
Check: examples
Result: ERROR
    Running examples in ‘linkcomm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: getLinkCommunities
    > ### Title: Extract Link Communities from a Network
    > ### Aliases: getLinkCommunities
    >
    > ### ** Examples
    >
    > ## Generate graph and extract link communities.
    > g <- swiss[,3:4]
    > lc <- getLinkCommunities(g)
    
     Found and removed 4 loop(s)
     Found and removed 2 duplicate edge(s)
    
     Hierarchical clustering of edges...
    
     Maximum partition density = 0.2601626
     Finishing up...1/4... 12%
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     Finishing up...3/4... 12%
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     Finishing up...3/4... 62%
     Finishing up...3/4... 75%
     Finishing up...3/4... 87%
     Finishing up...3/4... 100%
     Plotting...
     Colouring dendrogram... 1%
     Colouring dendrogram... 2%
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     Colouring dendrogram... 100%
    >
    > ## Extract communities by writing a temporary file to disk.
    > lc <- getLinkCommunities(g, edglim = 10)
    
     Found and removed 4 loop(s)
     Found and removed 2 duplicate edge(s)
    
    
    ERROR: linkcomm_diss.txt not found!
Flavor: r-patched-solaris-sparc