CRAN Package Check Results for Package linkcomm

Last updated on 2015-07-06 14:48:40.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-11 9.77 33.26 43.02 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-11 12.83 32.38 45.21 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-11 103.35 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-11 86.31 NOTE
r-devel-osx-x86_64-clang 1.0-11 80.40 OK
r-devel-windows-ix86+x86_64 1.0-11 54.00 75.00 129.00 NOTE
r-patched-linux-x86_64 1.0-11 12.82 38.58 51.40 OK
r-patched-solaris-sparc 1.0-11 481.20 ERROR
r-patched-solaris-x86 1.0-11 124.40 OK
r-release-linux-x86_64 1.0-11 13.37 32.89 46.26 OK
r-release-osx-x86_64-mavericks 1.0-11 OK
r-release-windows-ix86+x86_64 1.0-11 53.00 66.00 119.00 OK
r-oldrel-windows-ix86+x86_64 1.0-11 38.00 81.00 119.00 OK

Check Details

Version: 1.0-11
Check: R code for possible problems
Result: NOTE
    .COL: no visible global function definition for ‘is.leaf’
    corLinkcommCentrality: no visible global function definition for ‘lm’
    corLinkcommCentrality: no visible global function definition for
     ‘abline’
    corLinkcommCentrality: no visible global function definition for ‘cor’
    cutDendrogramAt: no visible global function definition for
     ‘as.dendrogram’
    cutDendrogramAt: no visible global function definition for
     ‘colorRampPalette’
    cutDendrogramAt: no visible global function definition for ‘dendrapply’
    cutDendrogramAt: no visible global function definition for ‘abline’
    cutDendrogramAt: no visible global function definition for ‘mtext’
    getClusterRelatedness: no visible global function definition for
     ‘as.dist’
    getClusterRelatedness: no visible global function definition for
     ‘hclust’
    getLinkCommunities: no visible global function definition for ‘as.dist’
    getLinkCommunities: no visible global function definition for ‘hclust’
    getLinkCommunities: no visible global function definition for ‘par’
    getLinkCommunities: no visible global function definition for ‘abline’
    getLinkCommunities: no visible global function definition for ‘lines’
    layout.spencer.circle: no visible global function definition for
     ‘runif’
    meta.communities: no visible global function definition for ‘hclust’
    meta.communities: no visible global function definition for ‘as.dist’
    plotLinkCommDend: no visible global function definition for
     ‘as.dendrogram’
    plotLinkCommDend: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommDend: no visible global function definition for
     ‘dendrapply’
    plotLinkCommDend: no visible global function definition for ‘plot’
    plotLinkCommDend: no visible global function definition for ‘abline’
    plotLinkCommDend: no visible global function definition for ‘mtext’
    plotLinkCommGraph: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommGraph: no visible global function definition for ‘dev.hold’
    plotLinkCommGraph: no visible global function definition for
     ‘dev.flush’
    plotLinkCommGraph: no visible global function definition for ‘par’
    plotLinkCommGraph: no visible global function definition for ‘plot’
    plotLinkCommGraph: no visible global function definition for ‘polygon’
    plotLinkCommGraph: no visible global function definition for ‘text’
    plotLinkCommGraph: no visible global function definition for ‘points’
    plotLinkCommMembers: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommSumm: no visible global function definition for ‘par’
    plotLinkCommSumm: no visible global function definition for
     ‘as.dendrogram’
    plotLinkCommSumm: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommSumm: no visible global function definition for
     ‘dendrapply’
    plotLinkCommSumm: no visible global function definition for ‘plot.new’
    plotLinkCommSumm: no visible global function definition for ‘plot’
    plotLinkCommSummComm: no visible global function definition for
     ‘colorRampPalette’
    plotLinkCommSummComm: no visible global function definition for
     ‘barplot’
    plotLinkCommSummComm: no visible global function definition for
     ‘abline’
    plotOCGraph: no visible global function definition for
     ‘colorRampPalette’
    plotOCGraph: no visible global function definition for ‘dev.hold’
    plotOCGraph: no visible global function definition for ‘dev.flush’
    plotOCGraph: no visible global function definition for ‘plot’
    plotOCGraph: no visible global function definition for ‘polygon’
    plotOCGraph: no visible global function definition for ‘text’
    Undefined global functions or variables:
     abline as.dendrogram as.dist barplot colorRampPalette cor dendrapply
     dev.flush dev.hold hclust is.leaf lines lm mtext par plot plot.new
     points polygon runif text
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0-11
Check: examples
Result: ERROR
    Running examples in ‘linkcomm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: getLinkCommunities
    > ### Title: Extract Link Communities from a Network
    > ### Aliases: getLinkCommunities
    >
    > ### ** Examples
    >
    > ## Generate graph and extract link communities.
    > g <- swiss[,3:4]
    > lc <- getLinkCommunities(g)
    
     Found and removed 4 loop(s)
     Found and removed 2 duplicate edge(s)
    
     Hierarchical clustering of edges...
    
     Maximum partition density = 0.2601626
     Finishing up...1/4... 12%
     Finishing up...1/4... 25%
     Finishing up...1/4... 37%
     Finishing up...1/4... 50%
     Finishing up...1/4... 62%
     Finishing up...1/4... 75%
     Finishing up...1/4... 87%
     Finishing up...1/4... 100%
     Finishing up...2/4... 12%
     Finishing up...2/4... 25%
     Finishing up...2/4... 37%
     Finishing up...2/4... 50%
     Finishing up...2/4... 62%
     Finishing up...2/4... 75%
     Finishing up...2/4... 87%
     Finishing up...2/4... 100%
     Finishing up...3/4... 12%
     Finishing up...3/4... 25%
     Finishing up...3/4... 37%
     Finishing up...3/4... 50%
     Finishing up...3/4... 62%
     Finishing up...3/4... 75%
     Finishing up...3/4... 87%
     Finishing up...3/4... 100%
     Plotting...
     Colouring dendrogram... 1%
     Colouring dendrogram... 2%
     Colouring dendrogram... 3%
     Colouring dendrogram... 4%
     Colouring dendrogram... 6%
     Colouring dendrogram... 7%
     Colouring dendrogram... 8%
     Colouring dendrogram... 9%
     Colouring dendrogram... 11%
     Colouring dendrogram... 12%
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     Colouring dendrogram... 27%
     Colouring dendrogram... 28%
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     Colouring dendrogram... 49%
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     Colouring dendrogram... 69%
     Colouring dendrogram... 70%
     Colouring dendrogram... 71%
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     Colouring dendrogram... 74%
     Colouring dendrogram... 75%
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     Colouring dendrogram... 79%
     Colouring dendrogram... 80%
     Colouring dendrogram... 81%
     Colouring dendrogram... 82%
     Colouring dendrogram... 83%
     Colouring dendrogram... 85%
     Colouring dendrogram... 86%
     Colouring dendrogram... 87%
     Colouring dendrogram... 88%
     Colouring dendrogram... 90%
     Colouring dendrogram... 91%
     Colouring dendrogram... 92%
     Colouring dendrogram... 93%
     Colouring dendrogram... 95%
     Colouring dendrogram... 96%
     Colouring dendrogram... 97%
     Colouring dendrogram... 98%
     Colouring dendrogram... 100%
    >
    > ## Extract communities by writing a temporary file to disk.
    > lc <- getLinkCommunities(g, edglim = 10)
    
     Found and removed 4 loop(s)
     Found and removed 2 duplicate edge(s)
    
     *** caught segfault ***
    address 0, cause 'memory not mapped'
    
    Traceback:
     1: getLinkCommunities(g, edglim = 10)
    aborting ...
Flavor: r-patched-solaris-sparc