CRAN Package Check Results for Package liso

Last updated on 2014-07-28 03:49:05.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2 0.66 150.30 150.96 NOTE
r-devel-linux-x86_64-debian-gcc 0.2 0.66 154.79 155.45 NOTE
r-devel-linux-x86_64-fedora-clang 0.2 292.13 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2 276.18 NOTE
r-devel-osx-x86_64-clang 0.2 216.93 NOTE
r-devel-windows-ix86+x86_64 0.2 3.00 193.00 196.00 NOTE
r-patched-linux-x86_64 0.2 0.68 138.40 139.08 NOTE
r-patched-solaris-sparc 0.2 1685.00 NOTE
r-patched-solaris-x86 0.2 304.40 NOTE
r-release-linux-ix86 0.2 1.00 151.38 152.38 NOTE
r-release-linux-x86_64 0.2 0.71 145.60 146.31 NOTE
r-release-osx-x86_64-mavericks 0.2 NOTE
r-release-osx-x86_64-snowleopard 0.2 NOTE
r-release-windows-ix86+x86_64 0.2 3.00 207.00 210.00 NOTE
r-oldrel-windows-ix86+x86_64 0.2 3.00 186.00 189.00 NOTE

Check Details

Version: 0.2
Check: for hidden files and directories
Result: NOTE
    Found the following hidden files and directories:
     .DESCRIPTION.swo
    These were most likely included in error. See section Package
    structure in the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     Iso MASS
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: R code for possible problems
Result: NOTE
    ave.sorted: warning in matrix(y[lens == i], nr = i): partial argument
     match of 'nr' to 'nrow'
    ave.sorted: warning in matrix(weights[lens == i], nr = i): partial
     argument match of 'nr' to 'nrow'
    liso.adaptive: warning in multistep(coefc = rep(0, (nrow(x) - 1) *
     ncol(x)), x = x, intercept = sum(weights * y)/sum(weights), residual
     = y - sum(weights * y)/sum(weights), sorter = getSort(x)): partial
     argument match of 'coefc' to 'coefchain'
    liso.backfit: warning in multistep(coefc = rep(0, (nrow(x) - 1) *
     ncol(x)), x = x, intercept = sum(weights * y)/sum(weights), residual
     = y - sum(weights * y)/sum(weights), sorter = getSort(x)): partial
     argument match of 'coefc' to 'coefchain'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'seq.log':
     seq.log
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter Writing R documentation files in the Writing R
    Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: Rd line widths
Result: NOTE
    Rd file 'cv.liso.Rd':
     \usage lines wider than 90 characters:
     cv.liso(x, y, K = 10, lambda = NULL, trace = FALSE, plot.it = FALSE, se = TRUE, weights = rep(1, length(y)), weightedcv = FALSE, huber ... [TRUNCATED]
    
    Rd file 'liso.Rd':
     \usage lines wider than 90 characters:
     liso(x, y, adaptive = TRUE, lambda = NULL, monotone = NULL, control=list(cv = NULL, liso = NULL ))
     \examples lines wider than 100 characters:
     ## Do an adaptive fit constrained to be monotone increasing, with an increased tolerance for convergence in the crossvalidation
    
    Rd file 'liso.backfit.Rd':
     \usage lines wider than 90 characters:
     liso.backfit(x, y, lambda=0, givebeta = FALSE, tol.target = 1e-04, weights= rep(1, length(y)), covweights=rep(1, ncol(x)), feed, trace= ... [TRUNCATED]
    
    Rd file 'liso.covweights.Rd':
     \examples lines wider than 100 characters:
     secondfit = liso.backfit(x,y2, 2, monotone=FALSE, covweights = liso.covweights(initialfit, signfind=TRUE))
    
    Rd file 'liso.maxlamb.Rd':
     \usage lines wider than 90 characters:
     liso.maxlamb(x=NULL,y=NULL,monotone=TRUE, covweights=rep(1, ncol(x)), weights=rep(1, length(y)))
    
    Rd file 'multistep.Rd':
     \usage lines wider than 90 characters:
     multistep(coefchain,x=NULL,intercept=0,sortedx = apply(x,2,sort),names = NULL, pinters=NULL,...)
    
    Rd file 'plot.multistep.Rd':
     \usage lines wider than 90 characters:
     plot(x = NULL, xpoints=NULL, ypoints = NULL, dims = 1:max(nrow(x$param), ncol(xpoints)) , ylimit = cbind(min(min(x),max(x)), max(max(x) ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc