CRAN Package Check Results for Package lme4

Last updated on 2015-03-06 09:49:36.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-7 38.66 350.36 389.02 WARN
r-devel-linux-x86_64-debian-gcc 1.1-7 41.86 346.12 387.98 WARN
r-devel-linux-x86_64-fedora-clang 1.1-7 792.22 WARN
r-devel-linux-x86_64-fedora-gcc 1.1-7 764.16 WARN
r-devel-osx-x86_64-clang 1.1-7 655.68 WARN
r-devel-windows-ix86+x86_64 1.1-7 119.00 774.00 893.00 WARN
r-patched-linux-x86_64 1.1-7 43.65 421.78 465.43 NOTE
r-patched-solaris-sparc 1.1-7 4249.10 ERROR
r-patched-solaris-x86 1.1-7 1183.30 NOTE
r-release-linux-ix86 1.1-7 52.30 553.57 605.86 NOTE
r-release-linux-x86_64 1.1-7 45.09 449.78 494.87 NOTE
r-release-osx-x86_64-mavericks 1.1-7 NOTE
r-release-osx-x86_64-snowleopard 1.1-7 NOTE
r-release-windows-ix86+x86_64 1.1-7 114.00 974.00 1088.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-7 118.00 973.00 1091.00 NOTE

Memtest notes: UBSAN-gcc UBSAN-gcc

Check Details

Version: 1.1-7
Check: installed package size
Result: NOTE
     installed size is 23.2Mb
     sub-directories of 1Mb or more:
     doc 1.3Mb
     libs 19.0Mb
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-7
Check: use of S3 registration
Result: WARN
    Registered S3 methods from standard package(s) overwritten by 'lme4':
     method from
     coef.lmList nlme
     formula.lmList nlme
     update.lmList nlme
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-devel-windows-ix86+x86_64

Version: 1.1-7
Check: R code for possible problems
Result: NOTE
    GQdk: no visible binding for global variable ‘GQN’
    vcov.merMod : calc.vcov.hess: no visible global function definition for
     ‘forceSymmetric’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.1-7
Check: tests
Result: ERROR
    Running the tests in ‘tests/testOptControl.R’ failed.
    Last 13 lines of output:
     Loading required package: Rcpp
     > dat <- read.csv(system.file("testdata","dat20101314.csv",package="lme4"))
     > NMcopy <- lme4:::Nelder_Mead
     >
     > cc <- capture.output(lmer(y ~ (1|Operator)+(1|Part)+(1|Part:Operator), data=dat,
     + control=
     + lmerControl("NMcopy",
     + optCtrl= list(iprint=20))))
     > ## check that printing goes through step 140 twice and up to 240 once
     > findStep <- function(str,n) sum(grepl(paste0("^\\(NM\\) ",n,": "),cc))
     > stopifnot(findStep(cc,140)==2 && findStep(cc,240)==1)
     Error: findStep(cc, 140) == 2 && findStep(cc, 240) == 1 is not TRUE
     Execution halted
Flavor: r-patched-solaris-sparc

Version: 1.1-7
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    This is mgcv 1.8-4. For overview type 'help("mgcv-package")'.
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'lmer.tex' failed.
    LaTeX errors:
    ! LaTeX Error: Missing \begin{document}.
    
    See the LaTeX manual or LaTeX Companion for explanation.
    Type H <return> for immediate help.
     ...
    ! Missing $ inserted.
    <inserted text>
     $
    l.16 ...<91>i<9a><db>v<e1>6<e8><e5>^^_^^G^^W[<db>o}<e4>^^?<91>a^^X<db><de>߅<ce><ec><a5>^^Q^
     <99>J<a5><d2><e9>4<c6><fd><f0><e1>ý{<f7><d2><e9><f4><fd><fb><f7>߾}<fb><fe><fd>...
    ! Undefined control sequence.
    l.16 ...*<85><89>x<fa><f4>i0<df>^^[^^?Accc<bf>~<fd><fa><9b>^^Q^^N<fb>E<ff>mT<f7>{<95>K<a7>\<bc>
     ڇ^^O^^_<ee><de>bhh<e8>ӧO<ae><eb>j<9a>f<db>v<b1>X...
    The control sequence at the end of the top line
    of your error message was never \def'ed. If you have
    ! You can't use `\eqno' in math mode.
    \endmathdisplay@a ...\df@tag \@empty \else \veqno
    
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64-mavericks