CRAN Package Check Results for Package lmec

Last updated on 2016-12-06 13:48:37.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 0.66 18.18 18.83 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 0.57 17.15 17.72 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 32.33 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.0 31.21 NOTE --no-stop-on-test-error
r-devel-macos-x86_64-clang 1.0 26.73 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 39.00 44.00 NOTE
r-patched-linux-x86_64 1.0 0.63 14.38 15.01 NOTE
r-patched-solaris-sparc 1.0 178.10 NOTE
r-patched-solaris-x86 1.0 32.30 NOTE
r-release-linux-x86_64 1.0 0.56 14.61 15.17 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 2.00 33.00 35.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 3.00 31.00 34.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘mvtnorm’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    lmec: warning in qr.Q(qrZ, compl = TRUE): partial argument match of
     ‘compl’ to ‘complete’
    lmec: warning in qr.Q(qra, compl = TRUE): partial argument match of
     ‘compl’ to ‘complete’
    lmec: no visible global function definition for ‘lm’
    lmec: no visible global function definition for ‘pnorm’
    lmec: no visible global function definition for ‘dnorm’
    lmec : vtrnorm2: no visible global function definition for ‘runif’
    lmec : vtrnorm2: no visible global function definition for ‘qnorm’
    lmec : vtrnorm2: no visible global function definition for ‘pnorm’
    lmec: no visible global function definition for ‘rnorm’
    lmec: no visible global function definition for ‘ar’
    Undefined global functions or variables:
     ar dnorm lm pnorm qnorm rnorm runif
    Consider adding
     importFrom("stats", "ar", "dnorm", "lm", "pnorm", "qnorm", "rnorm",
     "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'lmec-package.Rd':
     \examples lines wider than 100 characters:
     X<- cbind((UTIdata$Fup==0)+0, (UTIdata$Fup==1)+0, (UTIdata$Fup==3)+0, (UTIdata$Fup==6)+0, (UTIdata$Fup==9)+0, (UTIdata$Fup==12)+0, (UTI ... [TRUNCATED]
    
    Rd file 'lmec.Rd':
     \usage lines wider than 90 characters:
     lmec(yL, cens, X, Z, cluster, maxstep = 200, varstruct = "unstructured", init, method = "ML", epsstop = 0.001, abspmv = 0.001, mcmc0 = ... [TRUNCATED]
     \examples lines wider than 100 characters:
     X = cbind((UTIdata$Fup==0)+0, (UTIdata$Fup==1)+0, (UTIdata$Fup==3)+0, (UTIdata$Fup==6)+0, (UTIdata$Fup==9)+0, (UTIdata$Fup==12)+0, (UTI ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘mvtnorm’ which was already attached by Depends.
     Please remove these calls from your code.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    lmec: warning in qr.Q(qrZ, compl = TRUE): partial argument match of
     'compl' to 'complete'
    lmec: warning in qr.Q(qra, compl = TRUE): partial argument match of
     'compl' to 'complete'
    lmec: no visible global function definition for ‘lm’
    lmec: no visible global function definition for ‘pnorm’
    lmec: no visible global function definition for ‘dnorm’
    lmec : vtrnorm2: no visible global function definition for ‘runif’
    lmec : vtrnorm2: no visible global function definition for ‘qnorm’
    lmec : vtrnorm2: no visible global function definition for ‘pnorm’
    lmec: no visible global function definition for ‘rnorm’
    lmec: no visible global function definition for ‘ar’
    Undefined global functions or variables:
     ar dnorm lm pnorm qnorm rnorm runif
    Consider adding
     importFrom("stats", "ar", "dnorm", "lm", "pnorm", "qnorm", "rnorm",
     "runif")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-stop-on-test-error
Check: Rd line widths
Result: NOTE
    Rd file 'lmec-package.Rd':
     \examples lines wider than 100 characters:
     X<- cbind((UTIdata$Fup==0)+0, (UTIdata$Fup==1)+0, (UTIdata$Fup==3)+0, (UTIdata$Fup==6)+0, (UTIdata$Fup==9)+0, (UTIdata$Fup==12)+0, (UTI ... [TRUNCATED]
    
    Rd file 'lmec.Rd':
     \usage lines wider than 90 characters:
     lmec(yL, cens, X, Z, cluster, maxstep = 200, varstruct = "unstructured", init, method = "ML", epsstop = 0.001, abspmv = 0.001, mcmc0 = ... [TRUNCATED]
     \examples lines wider than 100 characters:
     X = cbind((UTIdata$Fup==0)+0, (UTIdata$Fup==1)+0, (UTIdata$Fup==3)+0, (UTIdata$Fup==6)+0, (UTIdata$Fup==9)+0, (UTIdata$Fup==12)+0, (UTI ... [TRUNCATED]
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: R code for possible problems
Result: NOTE
    lmec: warning in qr.Q(qrZ, compl = TRUE): partial argument match of
     'compl' to 'complete'
    lmec: warning in qr.Q(qra, compl = TRUE): partial argument match of
     'compl' to 'complete'
Flavor: r-oldrel-windows-ix86+x86_64