CRAN Package Check Results for Package lmerTest

Last updated on 2017-07-25 18:46:55.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-33 4.28 991.24 995.51 OK
r-devel-linux-x86_64-debian-gcc 2.0-33 4.82 1003.85 1008.66 OK
r-devel-linux-x86_64-fedora-clang 2.0-33 1849.65 OK
r-devel-linux-x86_64-fedora-gcc 2.0-33 1865.88 OK
r-devel-windows-ix86+x86_64 2.0-33 13.00 95.00 108.00 OK --no-examples --no-tests --no-vignettes
r-patched-linux-x86_64 2.0-33 4.25 1043.85 1048.10 OK
r-patched-solaris-x86 2.0-33 2021.90 ERROR
r-release-linux-x86_64 2.0-33 4.05 1029.99 1034.04 OK
r-release-windows-ix86+x86_64 2.0-33 12.00 127.00 139.00 OK --no-examples --no-tests --no-vignettes
r-release-osx-x86_64 2.0-33 OK
r-oldrel-windows-ix86+x86_64 2.0-33 10.00 132.00 142.00 OK --no-examples --no-tests --no-vignettes
r-oldrel-osx-x86_64 2.0-33 OK

Check Details

Version: 2.0-33
Check: tests
Result: ERROR
     Running ‘DamonData.R’ [13m/15m]
     Running ‘MAMSatterthKR.R’ [12s/13s]
     Running ‘MAMex.R’ [9s/11s]
     Running ‘NSstd.R’ [11s/13s]
     Running ‘OneFixedEff.R’ [10s/11s]
     Running ‘bugRand.R’ [26s/30s]
     Running ‘bugRefit.R’ [10s/12s]
     Running ‘bugUpdate.R’
     Running ‘bugUpdateLmer.R’ [9s/10s]
     Running ‘bugstep.R’ [16s/17s]
     Running ‘convergeTest.R’ [81s/92s]
     Running ‘envir.R’ [50s/60s]
     Running ‘formulas.R’ [13s/14s]
     Running ‘lmerMod.R’ [17s/19s]
     Running ‘packageExamplesExtra.R’ [17s/20s]
     Comparing ‘packageExamplesExtra.Rout’ to ‘packageExamplesExtra.Rout.save’ ...36c36
    < Days 29442 29442 1 18.188 45.046 2.571e-06 ***
    ---
    > Days 29442 29442 1 28.247 45.046 2.638e-07 ***
    96c96
    < Days 30031 30031 1 17 45.853 3.264e-06 ***
    ---
    > Days 30031 30031 1 27.997 45.853 2.359e-07 ***
     Running ‘rankDeficiency.R’ [14s/15s]
     Running ‘rankDeficiency2.R’ [19s/21s]
     Running ‘summary.R’ [373s/465s]
     Running ‘summaryDDF.R’
     Running ‘test-all.R’
     Running ‘testANCOVA.R’ [14s/15s]
     Running ‘testContrasts.R’ [21s/25s]
     Running ‘testExamplesFromPaper.R’ [52s/61s]
     Comparing ‘testExamplesFromPaper.Rout’ to ‘testExamplesFromPaper.Rout.save’ ...29,30c29,30
    < TVset:Picture:Repeat 0.00 1 1 1.0000
    < Repeat:Picture 0.00 1 2 1.0000
    ---
    > Repeat:Picture 0.00 1 1 1.0000
    > TVset:Picture:Repeat 0.00 1 2 1.0000
    192c192
    < TVset:Picture TV2 1 - TV3 3 -1.069 0.005 **
    ---
    > TVset:Picture TV2 1 - TV3 3 -1.068 0.005 **
    217c217
    < TVset:Picture TV2 2 - TV1 4 1.213 0.381
    ---
    > TVset:Picture TV2 2 - TV1 4 1.213 0.380
     Running ‘testKeep.R’ [102s/114s]
     Comparing ‘testKeep.Rout’ to ‘testKeep.Rout.save’ ...35c35
    < Homesize:Age 7.0540 2.3513 3 95.02 2.1263 6 0.1020
    ---
    > Homesize:Age 7.0541 2.3514 3 95.02 2.1263 6 0.1020
    85c85
    < sens1:Age 1.1949 0.5975 3 851.73 0.5377 8 0.5843
    ---
    > sens1:Age 1.1949 0.5975 3 851.72 0.5377 8 0.5843
    322,323c322,323
    < Picture 244.0612 81.3537 3 173 25.5020 kept <1e-07
    < TVset:Picture 22.4487 3.7415 6 173 1.1728 kept 0.3230
    ---
    > Picture 244.0613 81.3538 3 173 25.5020 kept <1e-07
    > TVset:Picture 22.4488 3.7415 6 173 1.1728 kept 0.3230
    468c468
    < TVset:Picture TV2 1 - TV1 2 2.4901 0.051 .
    ---
    > TVset:Picture TV2 1 - TV1 2 2.4901 0.050 .
    474c474
    < TVset:Picture TV2 1 - TV1 4 2.4214 0.065 .
    ---
    > TVset:Picture TV2 1 - TV1 4 2.4214 0.064 .
     Running ‘testNamesDDF.R’ [15s/18s]
     Running ‘testRand.R’ [65s/75s]
     Comparing ‘testRand.Rout’ to ‘testRand.Rout.save’ ...52c52
    < Homesize:Age 5.9012 1.9671 3 94.85 1.8972 7 0.1353
    ---
    > Homesize:Age 5.9012 1.9671 3 94.85 1.8971 7 0.1353
    59c59
    < sens2 18.1646 18.1646 1 12.19 17.4797 kept 0.0012
    ---
    > sens2 18.1648 18.1648 1 12.19 17.4799 kept 0.0012
     Running ‘testSlopesFactors.R’ [34s/43s]
     Running ‘testTVbo.R’ [22s/24s]
     Comparing ‘testTVbo.Rout’ to ‘testTVbo.Rout.save’ ...109c109
    < TVset 50.092 25.0462 2 14 14.0886 0.000444 ***
    ---
    > TVset 50.092 25.0462 2 14 14.0887 0.000444 ***
     Running ‘testType2.R’ [13s/14s]
     Running ‘updateData.R’ [14s/15s]
     Running ‘zeroDenom.R’ [12s/14s]
    Running the tests in ‘tests/DamonData.R’ failed.
    Complete output:
     > testSat <- TRUE
     > testKen <- TRUE
     >
     > if(testSat){
     + ## checking on big data sets
     +
     + require(lmerTest)
     +
     + load(system.file("testdata", "ttDamon.RData", package="lmerTest"))
     +
     + testFirstR02.test=lmer(RT2LogR ~ condition*v_matri_plus_n_indef_freq_sq+
     + (1+condition|Subject),ttDamon, REML=TRUE)
     +
     + an.sat <- anova(testFirstR02.test)
     +
     + TOL <- 1e-2 # for the check
     +
     + ## with 4 decimals should agree with SAS output
     + ## numbers before decimals should agree with SAS output
     + stopifnot(
     + all.equal(an.sat[,"DenDF"], c(76.206, 6074.6, 6146.1), tol = TOL),
     + all.equal(an.sat[, "F.value"], c(9.2182, 2.8360, 6.6544), tol = TOL)
     + , TRUE)
     +
     + ## check with calcSatterth function
     + # L <- matrix(0, nrow=3, ncol=8)
     + # L[1,2] <- L[2,3] <- L[3,4] <- 1
     + # system.time(calcSatterth(testFirstR02.test, L))
     + # if(require(pbkrtest))
     + # system.time(KRmodcomp(testFirstR02.test, L))
     +
     + if(testKen){
     + if(require(pbkrtest))
     + an.kenw <- anova(testFirstR02.test, ddf="kenw")
     + stopifnot(ncol(an.kenw) == 6)
     + }
     +
     + }
     Loading required package: lmerTest
     Loading required package: Matrix
     Loading required package: lme4
    
     Attaching package: 'lmerTest'
    
     The following object is masked from 'package:lme4':
    
     lmer
    
     The following object is masked from 'package:stats':
    
     step
    
     Loading required package: pbkrtest
     Note: method with signature 'sparseMatrix#ANY' chosen for function 'kronecker',
     target signature 'dgCMatrix#ngCMatrix'.
     "ANY#sparseMatrix" would also be valid
     anova from lme4 is returned
     some computational error has occurred in lmerTest
     Error: ncol(an.kenw) == 6 is not TRUE
     Execution halted
Flavor: r-patched-solaris-x86

Version: 2.0-33
Check: tests
Result: FAIL
    
Flavor: r-release-osx-x86_64