CRAN Package Check Results for Package lmerTest

Last updated on 2015-07-07 21:46:39.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-25 4.59 292.33 296.92 NOTE
r-devel-linux-x86_64-debian-gcc 2.0-25 4.02 309.87 313.89 NOTE
r-devel-linux-x86_64-fedora-clang 2.0-25 617.45 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0-25 613.28 NOTE
r-devel-osx-x86_64-clang 2.0-25 490.68 OK
r-devel-windows-ix86+x86_64 2.0-25 12.00 469.00 481.00 NOTE
r-patched-linux-x86_64 2.0-25 4.20 309.29 313.49 OK
r-patched-solaris-sparc 2.0-25 3024.80 ERROR
r-patched-solaris-x86 2.0-25 578.20 ERROR
r-release-linux-x86_64 2.0-25 4.10 316.90 321.00 OK
r-release-osx-x86_64-mavericks 2.0-25 OK
r-release-windows-ix86+x86_64 2.0-25 18.00 89.00 107.00 OK --no-examples --no-tests --no-vignettes
r-oldrel-windows-ix86+x86_64 2.0-25 22.00 138.00 160.00 OK --no-examples --no-tests --no-vignettes

Check Details

Version: 2.0-25
Check: R code for possible problems
Result: NOTE
    .covariateAve: no visible global function definition for ‘terms’
    .covariateAve: no visible global function definition for
     ‘delete.response’
    .covariateAve: no visible global function definition for ‘model.frame’
    .doLRT: no visible binding for global variable ‘data’
    .fixedrand: no visible global function definition for ‘terms’
    .fixedrand: no visible global function definition for ‘formula’
    .getX: no visible global function definition for ‘terms’
    .getX: no visible global function definition for ‘delete.response’
    .getX: no visible global function definition for ‘model.frame’
    .getX: no visible global function definition for ‘model.matrix’
    .get_vartypes: no visible global function definition for ‘terms’
    .get_vartypes: no visible global function definition for
     ‘delete.response’
    calcDiffsForEff: no visible global function definition for ‘combn’
    calcLSMEANS: no visible global function definition for ‘terms’
    calcSatterthJSS: no visible global function definition for ‘vcov’
    calcSatterthJSS: no visible global function definition for ‘pf’
    calculateTtestJSS: no visible global function definition for ‘pt’
    compareMixVSFix: no visible global function definition for ‘logLik’
    compareMixVSFix: no visible global function definition for ‘pchisq’
    createDesignMat: no visible global function definition for ‘terms’
    createDesignMat: no visible global function definition for ‘as.formula’
    createDesignMat: no visible global function definition for
     ‘model.matrix’
    createModelRedSlopes: no visible global function definition for
     ‘as.formula’
    createModelRedSlopes: no visible global function definition for
     ‘update.formula’
    devfun5: no visible global function definition for ‘model.matrix’
    elimNSFixedTerm: no visible global function definition for ‘formula’
    elimNSFixedTerm: no visible global function definition for ‘as.formula’
    elimRandEffs: no visible global function definition for ‘formula’
    fillLSMEANStab: no visible global function definition for ‘qt’
    fmElimRandTerm: no visible global function definition for ‘as.formula’
    fmElimRandTerm: no visible global function definition for
     ‘update.formula’
    getFormula: no visible global function definition for ‘formula’
    getRandTerms: no visible global function definition for ‘terms’
    getTermsToCompare: no visible global function definition for
     ‘complete.cases’
    makeContrastType2: no visible global function definition for ‘terms’
    makeContrastType3SAS: no visible global function definition for ‘terms’
    popMatrix: no visible global function definition for ‘terms’
    popMatrix: no visible global function definition for ‘delete.response’
    popMatrix: no visible global function definition for ‘model.frame’
    popMatrix: no visible global function definition for ‘model.matrix’
    print.difflsmeans: no visible global function definition for
     ‘printCoefmat’
    print.lsmeans: no visible global function definition for ‘printCoefmat’
    print.rand: no visible global function definition for ‘printCoefmat’
    print.step: no visible global function definition for ‘printCoefmat’
    refitLM: no visible global function definition for ‘model.frame’
    refitLM: no visible global function definition for ‘as.formula’
    refitLM: no visible global function definition for ‘terms’
    refitLM: no visible global function definition for ‘lm’
    rhoInitJSS: no visible global function definition for ‘sigma’
    saveResultsFixModel: no visible global function definition for ‘drop1’
    totalAnovaRandLsmeans: no visible global function definition for
     ‘model.frame’
    totalAnovaRandLsmeans: no visible global function definition for
     ‘model.matrix’
    totalAnovaRandLsmeans: no visible global function definition for
     ‘terms’
    totalAnovaRandLsmeans: no visible global function definition for
     ‘update.formula’
    totalAnovaRandLsmeans: no visible global function definition for
     ‘formula’
    totalAnovaRandLsmeans: no visible global function definition for
     ‘setNames’
    updateModel: no visible global function definition for ‘as.formula’
    updateModel: no visible global function definition for ‘terms’
    updateModel: no visible global function definition for ‘formula’
    vcovJSStheta2: no visible global function definition for ‘model.matrix’
    vcovJSStheta2.temp: no visible global function definition for
     ‘model.matrix’
    anova,merModLmerTest: no visible global function definition for
     ‘as.roman’
    Undefined global functions or variables:
     as.formula as.roman combn complete.cases data delete.response drop1
     formula lm logLik model.frame model.matrix pchisq pf printCoefmat pt
     qt setNames sigma terms update.formula vcov
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0-25
Check: tests
Result: ERROR
    Running the tests in ‘tests/testContrasts.R’ failed.
    Last 13 lines of output:
     > modelCarrots.sas <- lme4::lmer(Preference ~
     + sens2*sens1*Homesize*Age
     + + (1 | product) +
     + (1 + sens1 + sens2 | Consumer),
     + data=carrots,
     + contrasts = list(Homesize = "contr.SAS",
     + Age = "contr.SAS"))
     >
     > ## here an error produces
     > tools::assertError(stopifnot(all.equal(logLik(modelCarrots.treat),
     + logLik(modelCarrots.sas))))
     Error: Failed to get error in evaluating stopifnot(all.equal(logLik(mod ...
     Execution halted
Flavor: r-patched-solaris-sparc

Version: 2.0-25
Check: tests
Result: ERROR
    Running the tests in ‘tests/testContrasts.R’ failed.
    Last 13 lines of output:
     + Product*Information*Gender*Age
     + + (1 | Consumer)
     + + (1 | Product:Consumer)
     + + (1 | Information:Consumer), data=ham,
     + contrasts = list(Product = "contr.treatment",
     + Information = "contr.treatment",
     + Gender = "contr.treatment"))
     >
     > stopifnot(all.equal(logLik(modelHam.sas), logLik(modelHam.treat)))
     > stopifnot(all.equal(VarCorr(modelHam.sas), VarCorr(modelHam.treat),
     + tol = 1e-6))
     Error: all.equal(VarCorr(modelHam.sas), VarCorr(modelHam.treat), tol = 1e-06) is not TRUE
     Execution halted
Flavor: r-patched-solaris-x86