CRAN Package Check Results for Package lqa

Last updated on 2015-07-03 23:47:39.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-3 0.78 18.87 19.65 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-3 0.86 17.89 18.75 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-3 36.54 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-3 33.47 NOTE
r-devel-osx-x86_64-clang 1.0-3 36.87 NOTE
r-devel-windows-ix86+x86_64 1.0-3 6.00 42.00 48.00 NOTE
r-patched-linux-x86_64 1.0-3 0.78 18.73 19.51 NOTE
r-patched-solaris-sparc 1.0-3 235.90 NOTE
r-patched-solaris-x86 1.0-3 46.30 NOTE
r-release-linux-x86_64 1.0-3 0.80 18.97 19.76 NOTE
r-release-osx-x86_64-mavericks 1.0-3 NOTE
r-release-windows-ix86+x86_64 1.0-3 3.00 32.00 35.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-3 5.00 33.00 38.00 NOTE

Check Details

Version: 1.0-3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     lqa.control lqa.default lqa.formula lqa.update2 plot.lqa predict.lqa
     print.cv.lqa print.penalty print.pred.lqa print.summary.lqa
     summary.lqa
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    ForwardBoost: no visible global function definition for ‘var’
    GBlockBoost: no visible global function definition for ‘var’
    ao : getpenmat: no visible binding for global variable ‘var’
    ao : getpenmat: no visible global function definition for ‘cor’
    cv.lqa: no visible global function definition for ‘var’
    cv.nng: no visible global function definition for ‘var’
    icb : getpenmat: no visible binding for global variable ‘var’
    icb : getpenmat: no visible global function definition for ‘cor’
    licb : a.coefs: no visible binding for global variable ‘var’
    licb : a.coefs: no visible global function definition for ‘cor’
    lqa.default: Error while checking: invalid ‘envir’ argument
    lqa.formula: no visible global function definition for ‘model.response’
    lqa.formula: no visible global function definition for ‘is.empty.model’
    lqa.formula: no visible global function definition for ‘model.matrix’
    lqa.formula: no visible binding for global variable ‘contrasts’
    lqa.formula: no visible global function definition for ‘model.offset’
    lqa.formula: no visible global function definition for ‘model.extract’
    nng.update: no visible global function definition for ‘glm.fit’
    nng.update: no visible global function definition for ‘coef’
    nng.update: no visible global function definition for ‘optim’
    penalreg : getpenmat: no visible binding for global variable ‘var’
    penalreg : getpenmat: no visible global function definition for ‘cor’
    plot.lqa: no visible global function definition for ‘var’
    plot.lqa: no visible global function definition for ‘matplot’
    plot.lqa: no visible global function definition for ‘glm’
    plot.lqa: no visible global function definition for ‘points’
    plot.lqa: no visible global function definition for ‘axis’
    print.summary.lqa: no visible global function definition for ‘quantile’
    print.summary.lqa: no visible global function definition for
     ‘printCoefmat’
    print.summary.lqa: no visible global function definition for ‘naprint’
    summary.lqa: no visible global function definition for ‘residuals’
    weighted.fusion : getpenmat: no visible global function definition for
     ‘var’
    weighted.fusion : getpenmat: no visible global function definition for
     ‘cor’
    Undefined global functions or variables:
     axis coef contrasts cor glm glm.fit is.empty.model matplot
     model.extract model.matrix model.offset model.response naprint optim
     points printCoefmat quantile residuals var
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0-3
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'lqa':
     ‘lqa.update2’
    
    S3 methods shown with full name in documentation object 'lqa.control':
     ‘lqa.control’
    
    S3 methods shown with full name in documentation object 'plot.lqa':
     ‘plot.lqa’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-3
Check: R code for possible problems
Result: NOTE
    print.summary.lqa: warning in printCoefmat(coefs, P.value = FALSE,
     has.Pvalue = FALSE): partial argument match of 'P.value' to
     'P.values'
Flavors: r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64