CRAN Package Check Results for Package luca

Last updated on 2015-07-05 22:47:32.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-5 1.14 17.91 19.05 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-5 1.05 17.70 18.75 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-5 37.15 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-5 35.87 NOTE
r-devel-osx-x86_64-clang 1.0-5 36.22 NOTE
r-devel-windows-ix86+x86_64 1.0-5 6.00 49.00 55.00 NOTE
r-patched-linux-x86_64 1.0-5 1.08 18.06 19.14 NOTE
r-patched-solaris-sparc 1.0-5 218.80 NOTE
r-patched-solaris-x86 1.0-5 46.70 NOTE
r-release-linux-x86_64 1.0-5 1.08 18.08 19.16 NOTE
r-release-osx-x86_64-mavericks 1.0-5 NOTE
r-release-windows-ix86+x86_64 1.0-5 8.00 33.00 41.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-5 11.00 41.00 52.00 NOTE

Check Details

Version: 1.0-5
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0-5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘genetics’ ‘survival’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘genetics’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-5
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     summary.luca
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0-5
Check: R code for possible problems
Result: NOTE
    get.Z.HWP: no visible global function definition for ‘is.genotype’
    get.Z.HWP: no visible global function definition for ‘allele.count’
    get.Z.dep: no visible global function definition for ‘model.matrix’
    get.Z.dep: no visible global function definition for ‘formula’
    get.Z.saturated: no visible global function definition for ‘formula’
    get.Z.saturated: no visible global function definition for
     ‘model.matrix’
    get.lambda: no visible global function definition for ‘is.genotype’
    get.lambda: no visible global function definition for ‘model.matrix’
    get.lambda: no visible global function definition for ‘heterozygote’
    luca: no visible global function definition for ‘is.genotype’
    luca: no visible global function definition for ‘genotype’
    luca: no visible global function definition for ‘Surv’
    luca: no visible global function definition for ‘coxph.fit’
    luca: no visible global function definition for ‘coxph.control’
    summary.luca: no visible global function definition for ‘pchisq’
    Undefined global functions or variables:
     Surv allele.count coxph.control coxph.fit formula genotype
     heterozygote is.genotype model.matrix pchisq
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0-5
Check: R code for possible problems
Result: NOTE
    get.Z.HWP: no visible global function definition for ‘is.genotype’
    get.Z.HWP: no visible global function definition for ‘allele.count’
    get.lambda: no visible global function definition for ‘is.genotype’
    get.lambda: no visible global function definition for ‘heterozygote’
    luca: no visible global function definition for ‘is.genotype’
    luca: no visible global function definition for ‘genotype’
    luca: no visible global function definition for ‘Surv’
    luca: no visible global function definition for ‘coxph.fit’
    luca: no visible global function definition for ‘coxph.control’
    Undefined global functions or variables:
     Surv allele.count coxph.control coxph.fit genotype heterozygote
     is.genotype
Flavor: r-devel-osx-x86_64-clang

Version: 1.0-5
Check: R code for possible problems
Result: NOTE
    get.Z.HWP: no visible global function definition for ‘is.genotype’
    get.Z.HWP: no visible global function definition for ‘allele.count’
    get.lambda: no visible global function definition for ‘is.genotype’
    get.lambda: no visible global function definition for ‘heterozygote’
    luca: no visible global function definition for ‘is.genotype’
    luca: no visible global function definition for ‘genotype’
    luca: no visible global function definition for ‘Surv’
    luca: no visible global function definition for ‘coxph.fit’
    luca: no visible global function definition for ‘coxph.control’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64