CRAN Package Check Results for Package luca

Last updated on 2015-01-31 08:49:45.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-5 1.08 16.38 17.46 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-5 1.10 15.99 17.08 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-5 39.08 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-5 37.36 NOTE
r-devel-osx-x86_64-clang 1.0-5 44.66 NOTE
r-devel-windows-ix86+x86_64 1.0-5 7.00 29.00 36.00 NOTE
r-patched-linux-x86_64 1.0-5 1.15 20.31 21.46 NOTE
r-patched-solaris-sparc 1.0-5 218.10 NOTE
r-patched-solaris-x86 1.0-5 53.80 NOTE
r-release-linux-ix86 1.0-5 1.58 26.45 28.03 NOTE
r-release-linux-x86_64 1.0-5 1.20 21.79 22.98 NOTE
r-release-osx-x86_64-mavericks 1.0-5 NOTE
r-release-osx-x86_64-snowleopard 1.0-5 NOTE
r-release-windows-ix86+x86_64 1.0-5 6.00 41.00 47.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-5 7.00 68.00 75.00 NOTE

Check Details

Version: 1.0-5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘genetics’ ‘survival’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘genetics’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.0-5
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     summary.luca
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.0-5
Check: R code for possible problems
Result: NOTE
    get.Z.HWP: no visible global function definition for ‘is.genotype’
    get.Z.HWP: no visible global function definition for ‘allele.count’
    get.lambda: no visible global function definition for ‘is.genotype’
    get.lambda: no visible global function definition for ‘heterozygote’
    luca: no visible global function definition for ‘is.genotype’
    luca: no visible global function definition for ‘genotype’
    luca: no visible global function definition for ‘Surv’
    luca: no visible global function definition for ‘coxph.fit’
    luca: no visible global function definition for ‘coxph.control’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0-5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘genetics’ ‘survival’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘genetics’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'genetics' 'survival'
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard