CRAN Package Check Results for Package luca

Last updated on 2016-08-24 12:49:43.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0-5 3.08 33.86 36.94 NOTE
r-devel-linux-x86_64-debian-gcc 1.0-5 3.27 33.32 36.59 NOTE
r-devel-linux-x86_64-fedora-clang 1.0-5 71.31 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0-5 67.26 NOTE
r-devel-osx-x86_64-clang 1.0-5 56.65 NOTE
r-devel-windows-ix86+x86_64 1.0-5 11.00 79.00 90.00 NOTE
r-patched-linux-x86_64 1.0-5 3.16 32.19 35.35 NOTE
r-patched-solaris-sparc 1.0-5 374.60 NOTE
r-patched-solaris-x86 1.0-5 85.30 NOTE
r-release-linux-x86_64 1.0-5 2.96 31.97 34.93 NOTE
r-release-osx-x86_64-mavericks 1.0-5 NOTE
r-release-windows-ix86+x86_64 1.0-5 12.00 75.00 87.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0-5 11.00 58.00 69.00 NOTE

Check Details

Version: 1.0-5
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘genetics’ ‘survival’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘genetics’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0-5
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     summary.luca
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0-5
Check: R code for possible problems
Result: NOTE
    get.Z.HWP: no visible global function definition for ‘is.genotype’
    get.Z.HWP: no visible global function definition for ‘allele.count’
    get.Z.dep: no visible global function definition for ‘model.matrix’
    get.Z.dep: no visible global function definition for ‘formula’
    get.Z.saturated: no visible global function definition for ‘formula’
    get.Z.saturated: no visible global function definition for
     ‘model.matrix’
    get.lambda: no visible global function definition for ‘is.genotype’
    get.lambda: no visible global function definition for ‘model.matrix’
    get.lambda: no visible global function definition for ‘heterozygote’
    luca: no visible global function definition for ‘is.genotype’
    luca: no visible global function definition for ‘genotype’
    luca: no visible global function definition for ‘Surv’
    luca: no visible global function definition for ‘coxph.fit’
    luca: no visible global function definition for ‘coxph.control’
    summary.luca: no visible global function definition for ‘pchisq’
    Undefined global functions or variables:
     Surv allele.count coxph.control coxph.fit formula genotype
     heterozygote is.genotype model.matrix pchisq
    Consider adding
     importFrom("stats", "formula", "model.matrix", "pchisq")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 1.0-5
Check: R code for possible problems
Result: NOTE
    get.Z.HWP: no visible global function definition for 'is.genotype'
    get.Z.HWP: no visible global function definition for 'allele.count'
    get.lambda: no visible global function definition for 'is.genotype'
    get.lambda: no visible global function definition for 'heterozygote'
    luca: no visible global function definition for 'is.genotype'
    luca: no visible global function definition for 'genotype'
    luca: no visible global function definition for 'Surv'
    luca: no visible global function definition for 'coxph.fit'
    luca: no visible global function definition for 'coxph.control'
Flavor: r-oldrel-windows-ix86+x86_64