CRAN Package Check Results for Package mcmcplots

Last updated on 2014-09-20 08:51:47.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.1 1.10 26.94 28.04 NOTE
r-devel-linux-x86_64-debian-gcc 0.4.1 1.05 26.60 27.64 NOTE
r-devel-linux-x86_64-fedora-clang 0.4.1 52.98 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4.1 48.90 NOTE
r-devel-osx-x86_64-clang 0.4.1 53.25 NOTE
r-devel-windows-ix86+x86_64 0.4.1 5.00 41.00 46.00 NOTE
r-patched-linux-x86_64 0.4.1 1.22 27.49 28.71 NOTE
r-patched-solaris-sparc 0.4.1 322.00 NOTE
r-patched-solaris-x86 0.4.1 72.10 NOTE
r-release-linux-ix86 0.4.1 1.58 39.96 41.54 NOTE
r-release-linux-x86_64 0.4.1 1.14 27.67 28.82 NOTE
r-release-osx-x86_64-mavericks 0.4.1 NOTE
r-release-osx-x86_64-snowleopard 0.4.1 NOTE
r-release-windows-ix86+x86_64 0.4.1 4.00 43.00 47.00 NOTE
r-oldrel-windows-ix86+x86_64 0.4.1 4.00 45.00 49.00 NOTE

Check Details

Version: 0.4.1
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘coda’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    ':::' call which should be '::': ‘coda:::mcmc’
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.1
Check: R code for possible problems
Result: NOTE
    as.mcmc.bugs: no visible global function definition for ‘mcmc’
    as.mcmc.bugs: no visible global function definition for ‘mcmc.list’
    as.mcmc.bugs: no visible global function definition for ‘varnames<-’
    autplot1: no visible global function definition for ‘nvar’
    caterplot: no visible global function definition for ‘varnames’
    caterplot: no visible global function definition for ‘varnames<-’
    caterplot: no visible global function definition for ‘as.mcmc.list’
    caterplot: no visible global function definition for ‘as.mcmc’
    convert.mcmc.list: no visible global function definition for
     ‘is.mcmc.list’
    convert.mcmc.list: no visible global function definition for ‘is.mcmc’
    convert.mcmc.list: no visible binding for global variable ‘as.mcmc’
    convert.mcmc.list: no visible global function definition for ‘as.mcmc’
    convert.mcmc.list: no visible global function definition for
     ‘mcmc.list’
    denoverplot: no visible global function definition for ‘is.mcmc’
    denoverplot: no visible global function definition for ‘is.mcmc.list’
    denoverplot: no visible global function definition for ‘as.mcmc’
    denoverplot: no visible global function definition for ‘varnames’
    denplot: no visible global function definition for ‘as.mcmc.list’
    denplot: no visible global function definition for ‘as.mcmc’
    denplot: no visible global function definition for ‘varnames’
    denplot: no visible global function definition for ‘varnames<-’
    mcmcplot: no visible global function definition for ‘varnames’
    mcmcplot: no visible global function definition for ‘varnames<-’
    mcmcplot1: no visible global function definition for ‘varnames’
    parcorplot: no visible global function definition for ‘is.mcmc’
    parcorplot: no visible global function definition for ‘is.mcmc.list’
    parcorplot: no visible global function definition for ‘as.mcmc’
    parcorplot: no visible global function definition for ‘mcmc.list’
    parcorplot: no visible global function definition for ‘varnames’
    traplot: no visible global function definition for ‘varnames’
    traplot: no visible global function definition for ‘varnames<-’
    traplot1: no visible global function definition for ‘nchain’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 0.4.1
Check: Rd line widths
Result: NOTE
    Rd file 'autplot1.Rd':
     \usage lines wider than 90 characters:
     autplot1(x, chain = 1, lag.max = NULL, partial = FALSE, col = mcmcplotsPalette(1), style = c("gray", "plain"), ylim = NULL, ...)
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means,each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
    
    Rd file 'caterplot.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means, each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
    
    Rd file 'caterpoints.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means, each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
    
    Rd file 'denoverplot.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means, each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
     fakemcmc2 <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means, each=nr)), nrow=nr, dimnames=list(NULL,pnames)))) ... [TRUNCATED]
     denoverplot(fakemcmc, fakemcmc2, style="plain", col=mcmcplotsPalette(3, type="grayscale"), ci=0.95, greek=TRUE)
    
    Rd file 'denoverplot1.Rd':
     \examples lines wider than 100 characters:
     denoverplot1(rnorm(1000, 0.0, 1.0), rnorm(1000, 0.1, 1.0), style="plain", col=mcmcplotsPalette(2, type="grayscale"), ci=0.95)
    
    Rd file 'denplot.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means,each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
    
    Rd file 'graypr.Rd':
     \usage lines wider than 90 characters:
     .graypr(x.axis = TRUE, y.axis = TRUE, x.major = TRUE, y.major = TRUE, x.minor = TRUE, y.minor=TRUE, x.malty = 1, y.malty = 1, x.milty = ... [TRUNCATED]
    
    Rd file 'mcmcplot.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means,each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
    
    Rd file 'mcmcplots-package.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means,each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
     fakemcmc2 <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means, each=nr)), nrow=nr, dimnames=list(NULL,pnames)))) ... [TRUNCATED]
    
    Rd file 'mcmcplotsPalette.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means,each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
    
    Rd file 'traplot.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means,each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
    
    Rd file 'traplot1.Rd':
     \examples lines wider than 100 characters:
     fakemcmc <- as.mcmc.list(lapply(1:3, function(i) mcmc(matrix(rnorm(nc*nr, rep(means,each=nr)), nrow=nr, dimnames=list(NULL,pnames)))))
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.4.1
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: 'coda'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    ':::' call which should be '::': 'coda:::mcmc'
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard