CRAN Package Check Results for Package mcprofile

Last updated on 2015-04-19 23:49:18.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2-1 1.24 36.34 37.58 OK
r-devel-linux-x86_64-debian-gcc 0.2-1 1.12 36.49 37.61 OK
r-devel-linux-x86_64-fedora-clang 0.2-1 73.66 OK
r-devel-linux-x86_64-fedora-gcc 0.2-1 70.64 OK
r-devel-osx-x86_64-clang 0.2-1 67.79 OK
r-devel-windows-ix86+x86_64 0.2-1 6.00 74.00 80.00 OK
r-patched-linux-x86_64 0.2-1 1.16 35.52 36.67 OK
r-patched-solaris-sparc 0.2-1 482.00 OK
r-patched-solaris-x86 0.2-1 91.60 OK
r-release-linux-x86_64 0.2-1 1.13 35.02 36.15 OK
r-release-osx-x86_64-mavericks 0.2-1 ERROR
r-release-osx-x86_64-snowleopard 0.2-1 ERROR
r-release-windows-ix86+x86_64 0.2-1 3.00 50.00 53.00 OK
r-oldrel-windows-ix86+x86_64 0.2-1 6.00 70.00 76.00 OK

Check Details

Version: 0.2-1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘multcomp’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.2-1
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘multcomp’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.2-1
Check: examples
Result: ERROR
    Running examples in ‘mcprofile-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: hoa
    > ### Title: Higher order asymptotics using the modified likelihood root
    > ### Aliases: hoa
    > ### Keywords: misc
    >
    > ### ** Examples
    >
    > #######################################
    > ## cell transformation assay example ##
    > #######################################
    >
    > str(cta)
    'data.frame': 80 obs. of 2 variables:
     $ conc: num 0 0 0 0 0 0 0 0 0 0 ...
     $ foci: int 0 1 0 0 0 0 0 0 0 2 ...
    > ## change class of cta$conc into factor
    > cta$concf <- factor(cta$conc, levels=unique(cta$conc))
    >
    > ggplot(cta, aes(y=foci, x=concf)) +
    + geom_boxplot() +
    + geom_dotplot(binaxis = "y", stackdir = "center", binwidth = 0.2) +
    + xlab("concentration")
    >
    >
    > # glm fit assuming a Poisson distribution for foci counts
    > # parameter estimation on the log link
    > # removing the intercept
    > fm <- glm(foci ~ concf-1, data=cta, family=poisson(link="log"))
    >
    > ### Comparing each dose to the control by Dunnett-type comparisons
    > # Constructing contrast matrix
    > library(multcomp)
    Error in library(multcomp) : there is no package called ‘multcomp’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.2-1
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘mcprofile.Rmd’
     ...
    Residual Deviance: 106 AIC: 282.9
    
    > all.equal(deviance(m1), deviance(m2))
    [1] TRUE
    
    > library(multcomp)
    
     When sourcing ‘mcprofile.R’:
    Error: there is no package called ‘multcomp’
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.2-1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: ggplot2
    Waiting for profiling to be done...
    Quitting from lines 160-165 (mcprofile.Rmd)
    Error: processing vignette 'mcprofile.Rmd' failed with diagnostics:
    there is no package called 'multcomp'
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 0.2-1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘ggplot2’
    
    Packages suggested but not available for checking: ‘knitr’ ‘multcomp’
    
    VignetteBuilder package required for checking but installed: ‘knitr’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard