CRAN Package Check Results for Package mcprofile

Last updated on 2014-04-19 08:50:16.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-7 2.00 55.71 57.72 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-7 1.90 56.81 58.71 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-7 123.56 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-7 117.01 NOTE
r-devel-macosx-x86_64-clang 0.1-7 102.27 NOTE
r-devel-macosx-x86_64-gcc 0.1-7 ERROR
r-devel-windows-ix86+x86_64 0.1-7 6.00 86.00 92.00 NOTE
r-patched-linux-x86_64 0.1-7 1.87 57.06 58.93 NOTE
r-patched-solaris-sparc 0.1-7 626.90 NOTE
r-patched-solaris-x86 0.1-7 140.70 NOTE
r-release-linux-ix86 0.1-7 4.00 93.00 97.00 NOTE
r-release-linux-x86_64 0.1-7 1.95 56.16 58.12 NOTE
r-release-macosx-x86_64 0.1-7 ERROR
r-release-windows-ix86+x86_64 0.1-7 12.00 91.00 103.00 NOTE
r-oldrel-windows-ix86+x86_64 0.1-7 8.00 91.00 99.00 NOTE

Check Details

Version: 0.1-7
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘ggplot2’ ‘mvtnorm’ ‘quadprog’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macosx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-macosx-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-7
Check: package dependencies
Result: ERROR
    Package required but not available: ‘ggplot2’
    
    Packages suggested but not available for checking: ‘knitr’ ‘multcomp’
    
    Files named as vignettes but with no recognized vignette engine:
     ‘inst/doc/mcprofile.Rnw’
    (Is a VignetteBuilder field missing?)
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-macosx-x86_64-gcc

Version: 0.1-7
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘multcomp’
Flavor: r-release-macosx-x86_64

Version: 0.1-7
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘multcomp’
Flavor: r-release-macosx-x86_64

Version: 0.1-7
Check: examples
Result: ERROR
    Running examples in ‘mcprofile-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: hoa
    > ### Title: Higher order asymptotics using the modified likelihood root
    > ### Aliases: hoa
    > ### Keywords: misc
    >
    > ### ** Examples
    >
    > #######################################
    > ## cell transformation assay example ##
    > #######################################
    >
    > str(cta)
    'data.frame': 80 obs. of 2 variables:
     $ conc: num 0 0 0 0 0 0 0 0 0 0 ...
     $ foci: int 0 1 0 0 0 0 0 0 0 2 ...
    > ## change class of cta$conc into factor
    > cta$concf <- factor(cta$conc, levels=unique(cta$conc))
    >
    > ggplot(cta, aes(y=foci, x=concf)) +
    + geom_boxplot() +
    + geom_dotplot(binaxis = "y", stackdir = "center", binwidth = 0.2) +
    + xlab("concentration")
    >
    >
    > # glm fit assuming a Poisson distribution for foci counts
    > # parameter estimation on the log link
    > # removing the intercept
    > fm <- glm(foci ~ concf-1, data=cta, family=poisson(link="log"))
    >
    > ### Comparing each dose to the control by Dunnett-type comparisons
    > # Constructing contrast matrix
    > library(multcomp)
    Error in library(multcomp) : there is no package called ‘multcomp’
    Execution halted
Flavor: r-release-macosx-x86_64