CRAN Package Check Results for Package mcsm

Last updated on 2014-04-25 09:52:17.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.14 46.42 47.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.06 45.65 46.71 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 92.26 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 90.11 NOTE
r-devel-osx-x86_64-clang 1.0 73.92 NOTE
r-devel-osx-x86_64-gcc 1.0 NOTE
r-devel-windows-ix86+x86_64 1.0 3.00 66.00 69.00 NOTE
r-patched-linux-x86_64 1.0 1.06 44.21 45.28 NOTE
r-patched-solaris-sparc 1.0 543.70 NOTE
r-patched-solaris-x86 1.0 107.50 NOTE
r-release-linux-ix86 1.0 1.00 70.00 71.00 NOTE
r-release-linux-x86_64 1.0 1.06 44.52 45.59 NOTE
r-release-osx-x86_64-mavericks 1.0 WARN
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 4.00 62.00 66.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 5.00 55.00 60.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MASS’ ‘coda’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘MASS’ ‘coda’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    EMcenso : like: warning in pnorm(the - a, log = T): partial argument
     match of 'log' to 'log.p'
    adapump: warning in rgamma(1, sha = gamma + 10 * alpha): partial
     argument match of 'sha' to 'shape'
    adapump: warning in rgamma(10, sha = data + alpha): partial argument
     match of 'sha' to 'shape'
    adapump: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
     argument match of 'sha' to 'shape'
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nro' to 'nrow'
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nco' to 'ncol'
    kscheck: warning in rgamma(1, sha = gamma + 10 * alpha): partial
     argument match of 'sha' to 'shape'
    kscheck: warning in rgamma(10, sha = data + alpha): partial argument
     match of 'sha' to 'shape'
    kscheck: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
     argument match of 'sha' to 'shape'
    logima: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of 'nro' to 'nrow'
    logima: warning in rnorm(N, m = -0.72, sd = 0.55): partial argument
     match of 'm' to 'mean'
    logima: warning in rnorm(N, m = 0.1, sd = 0.212): partial argument
     match of 'm' to 'mean'
    logima: warning in dnorm(sim[, 1], m = -0.72, sd = 0.55): partial
     argument match of 'm' to 'mean'
    logima: warning in dnorm(sim[, 2], m = 0.1, sd = 0.2121): partial
     argument match of 'm' to 'mean'
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of 'rep' to 'replace'
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of 'pro' to 'prob'
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nro' to 'nrow'
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nco' to 'ncol'
    mhmix: warning in dnorm(prop, curmean, lo = T): partial argument match
     of 'lo' to 'log'
    mhmix: warning in dnorm(the[iter, ], meanprop, lo = T): partial
     argument match of 'lo' to 'log'
    mochoice : gocho: warning in sample(c(0, 1), lga, rep = T): partial
     argument match of 'rep' to 'replace'
    pimamh : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimamh : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN
     = "*"), log = T): partial argument match of 'log' to 'log.p'
    pimamh: warning in dnorm(prop, mean = curmean, sd = scale, lo = T):
     partial argument match of 'lo' to 'log'
    pimamh: warning in dnorm(the[t - 1, ], mean = propmean, sd = scale, lo
     = T): partial argument match of 'lo' to 'log'
    pimamh: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of 'nro' to 'nrow'
    pimax : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : newlike: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN
     = "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : newlike: warning in pnorm(q = -a - outer(X = b, Y = da[, 2],
     FUN = "*"), log = T): partial argument match of 'log' to 'log.p'
    randogibs: warning in sample(c(-1, 0, 1), n * m, rep = T): partial
     argument match of 'rep' to 'replace'
    randogit: warning in sample(c(-1, 0, 1), n * m, rep = TRUE): partial
     argument match of 'rep' to 'replace'
    SAmix : like: no visible binding for global variable ‘da’
    betagen: no visible binding for global variable ‘x’
    challenge: no visible binding for global variable ‘challenger’
    maximple: no visible global function definition for ‘h’
    randomeff: no visible binding for global variable ‘Energy’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    68407892/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'MASS' 'coda'
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard