CRAN Package Check Results for Package mcsm

Last updated on 2015-06-30 11:48:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 0.87 32.74 33.61 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 0.88 32.14 33.02 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 67.41 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 63.09 NOTE
r-devel-osx-x86_64-clang 1.0 65.25 NOTE
r-devel-windows-ix86+x86_64 1.0 6.00 50.00 56.00 NOTE
r-patched-linux-x86_64 1.0 0.89 32.96 33.85 NOTE
r-patched-solaris-sparc 1.0 437.80 NOTE
r-patched-solaris-x86 1.0 84.40 NOTE
r-release-linux-x86_64 1.0 0.90 35.00 35.90 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 6.00 53.00 59.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 4.00 61.00 65.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MASS’ ‘coda’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘MASS’ ‘coda’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of ‘nro’ to ‘nrow’
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of ‘nco’ to ‘ncol’
    logima: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of ‘nro’ to ‘nrow’
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of ‘rep’ to ‘replace’
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of ‘pro’ to ‘prob’
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of ‘nro’ to ‘nrow’
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of ‘nco’ to ‘ncol’
    mochoice : gocho: warning in sample(c(0, 1), lga, rep = T): partial
     argument match of ‘rep’ to ‘replace’
    randogibs: warning in sample(c(-1, 0, 1), n * m, rep = T): partial
     argument match of ‘rep’ to ‘replace’
    randogit: warning in sample(c(-1, 0, 1), n * m, rep = TRUE): partial
     argument match of ‘rep’ to ‘replace’
    Braking: no visible binding for global variable ‘cars’
    Braking: no visible global function definition for ‘coefficients’
    Braking: no visible global function definition for ‘lm’
    Braking : dcand: no visible global function definition for ‘dnorm’
    Braking: no visible global function definition for ‘rnorm’
    Braking: no visible global function definition for ‘rgamma’
    Braking: no visible global function definition for ‘runif’
    Braking: no visible global function definition for ‘plot’
    Braking: no visible global function definition for ‘lines’
    Braking: no visible global function definition for ‘points’
    EMcenso : like: no visible global function definition for ‘dnorm’
    EMcenso : like: no visible global function definition for ‘pnorm’
    EMcenso : EMI: no visible global function definition for ‘rnorm’
    EMcenso : EMI: no visible global function definition for ‘dnorm’
    EMcenso : EMI: no visible global function definition for ‘pnorm’
    EMcenso: no visible global function definition for ‘plot’
    EMcenso: no visible global function definition for ‘lines’
    EMcenso: no visible global function definition for ‘curve’
    SAmix : like: no visible global function definition for ‘dnorm’
    SAmix : like: no visible binding for global variable ‘da’
    SAmix: no visible global function definition for ‘rnorm’
    SAmix: no visible global function definition for ‘runif’
    adapump: no visible global function definition for ‘rgamma’
    adapump : post: no visible global function definition for ‘dgamma’
    adapump: no visible global function definition for ‘var’
    adapump: no visible global function definition for ‘runif’
    adapump: no visible global function definition for ‘plot’
    adapump: no visible global function definition for ‘polygon’
    adapump: no visible global function definition for ‘lines’
    betagen: no visible global function definition for ‘runif’
    betagen: no visible global function definition for ‘par’
    betagen: no visible global function definition for ‘plot’
    betagen: no visible global function definition for ‘points’
    betagen: no visible global function definition for ‘dbeta’
    betagen: no visible global function definition for ‘curve’
    betagen: no visible binding for global variable ‘x’
    betagen: no visible global function definition for ‘abline’
    betagen: no visible global function definition for ‘rbeta’
    challenge : rtrun: no visible global function definition for ‘qnorm’
    challenge : rtrun: no visible global function definition for ‘pnorm’
    challenge : rtrun: no visible global function definition for ‘runif’
    challenge: no visible binding for global variable ‘challenger’
    challenge: no visible global function definition for ‘glm’
    challenge: no visible global function definition for ‘sd’
    challenge: no visible global function definition for ‘runif’
    dyadic: no visible global function definition for ‘runif’
    dyadic: no visible global function definition for ‘plot’
    dyadic: no visible global function definition for ‘lines’
    gibbsmix: no visible global function definition for ‘rnorm’
    gibbsmix : like: no visible global function definition for ‘dnorm’
    gibbsmix: no visible global function definition for ‘runif’
    gibbsmix: no visible global function definition for ‘dnorm’
    gibbsmix: no visible global function definition for ‘par’
    gibbsmix: no visible global function definition for ‘image’
    gibbsmix: no visible global function definition for ‘contour’
    gibbsmix: no visible global function definition for ‘points’
    gibbsmix: no visible global function definition for ‘lines’
    hastings: no visible global function definition for ‘runif’
    hastings: no visible global function definition for ‘par’
    hastings: no visible global function definition for ‘plot’
    hastings: no visible global function definition for ‘hist’
    hastings: no visible global function definition for ‘curve’
    hastings: no visible global function definition for ‘dnorm’
    hastings: no visible global function definition for ‘acf’
    jamestein: no visible global function definition for ‘rnorm’
    jamestein: no visible global function definition for ‘par’
    jamestein: no visible global function definition for ‘plot’
    jamestein: no visible global function definition for ‘lines’
    kscheck: no visible global function definition for ‘rgamma’
    kscheck: no visible global function definition for ‘ks.test’
    kscheck: no visible global function definition for ‘par’
    kscheck: no visible global function definition for ‘plot’
    kscheck: no visible global function definition for ‘heidel.diag’
    kscheck: no visible global function definition for ‘mcmc’
    kscheck: no visible global function definition for ‘geweke.diag’
    logima : like: no visible binding for global variable ‘Pima.tr’
    logima: no visible binding for global variable ‘Pima.tr’
    logima: no visible global function definition for ‘glm’
    logima: no visible binding for global variable ‘binomial’
    logima: no visible global function definition for ‘image’
    logima: no visible global function definition for ‘contour’
    logima: no visible global function definition for ‘rnorm’
    logima: no visible global function definition for ‘dnorm’
    logima: no visible global function definition for ‘lm’
    logima: no visible global function definition for ‘par’
    logima: no visible global function definition for ‘plot’
    logima: no visible global function definition for ‘lines’
    maximple: no visible global function definition for ‘runif’
    maximple: no visible global function definition for ‘h’
    mhmix: no visible global function definition for ‘rnorm’
    mhmix : like: no visible global function definition for ‘dnorm’
    mhmix: no visible global function definition for ‘runif’
    mhmix: no visible global function definition for ‘par’
    mhmix: no visible global function definition for ‘image’
    mhmix: no visible global function definition for ‘contour’
    mhmix: no visible global function definition for ‘points’
    mhmix : gradlike: no visible global function definition for ‘dnorm’
    mhmix: no visible global function definition for ‘dnorm’
    mhmix: no visible global function definition for ‘lines’
    mochoice: no visible binding for global variable ‘swiss’
    mochoice : gocho: no visible global function definition for ‘lm’
    mump: no visible global function definition for ‘rexp’
    mump: no visible global function definition for ‘rgamma’
    mump: no visible global function definition for ‘gelman.plot’
    mump: no visible global function definition for ‘mcmc.list’
    mump: no visible global function definition for ‘mcmc’
    mump: no visible global function definition for ‘autocorr.diag’
    normbyde: no visible global function definition for ‘rnorm’
    normbyde: no visible global function definition for ‘runif’
    normbyde: no visible global function definition for ‘rexp’
    normbyde: no visible global function definition for ‘dnorm’
    normbyde: no visible global function definition for ‘par’
    normbyde: no visible global function definition for ‘plot’
    normbyde: no visible global function definition for ‘lines’
    normbyde: no visible global function definition for ‘acf’
    normbyde: no visible global function definition for ‘var’
    pimamh: no visible binding for global variable ‘Pima.tr’
    pimamh : like: no visible global function definition for ‘pnorm’
    pimamh : grad: no visible global function definition for ‘pnorm’
    pimamh : grad: no visible global function definition for ‘dnorm’
    pimamh: no visible global function definition for ‘glm’
    pimamh: Error while checking: invalid ‘envir’ argument
    pimax: no visible binding for global variable ‘Pima.tr’
    pimax : like: no visible global function definition for ‘pnorm’
    pimax : newlike: no visible global function definition for ‘pnorm’
    pimax : margap: no visible global function definition for ‘rt’
    pimax : margap: no visible global function definition for ‘dt’
    pimax: no visible global function definition for ‘par’
    pimax: no visible global function definition for ‘plot’
    pimax: no visible global function definition for ‘polygon’
    pimax: no visible global function definition for ‘lines’
    pimax: no visible global function definition for ‘rt’
    pimax: no visible global function definition for ‘dt’
    randogibs: no visible global function definition for ‘rnorm’
    randogibs: no visible global function definition for ‘runif’
    randogibs: no visible global function definition for ‘glm’
    randogibs: no visible binding for global variable ‘binomial’
    randogibs: no visible global function definition for ‘rgamma’
    randogibs: no visible global function definition for ‘plot’
    randogibs: no visible global function definition for ‘mcmc’
    randogibs: no visible global function definition for ‘cumuplot’
    randogit: no visible global function definition for ‘rnorm’
    randogit: no visible global function definition for ‘runif’
    randogit: no visible global function definition for ‘glm’
    randogit: no visible binding for global variable ‘binomial’
    randogit: no visible global function definition for ‘sd’
    randogit: no visible global function definition for ‘par’
    randogit: no visible global function definition for ‘plot’
    randomeff: no visible binding for global variable ‘Energy’
    randomeff: no visible global function definition for ‘var’
    randomeff: no visible global function definition for ‘rnorm’
    randomeff: no visible global function definition for ‘rgamma’
    randomeff: no visible global function definition for ‘par’
    randomeff: no visible global function definition for ‘hist’
    rdirichlet: no visible global function definition for ‘rgamma’
    reparareff: no visible global function definition for ‘var’
    reparareff: no visible global function definition for ‘rnorm’
    reparareff: no visible global function definition for ‘rgamma’
    reparareff: no visible global function definition for ‘par’
    reparareff: no visible global function definition for ‘acf’
    reparareff: no visible global function definition for ‘cor’
    rmunorm: no visible global function definition for ‘rnorm’
    sqar: no visible global function definition for ‘rnorm’
    sqar: no visible global function definition for ‘runif’
    sqar: no visible global function definition for ‘par’
    sqar: no visible global function definition for ‘geweke.diag’
    sqar: no visible global function definition for ‘mcmc’
    sqar: no visible global function definition for ‘heidel.diag’
    sqar: no visible global function definition for ‘ks.test’
    sqar: no visible global function definition for ‘hist’
    sqar: no visible global function definition for ‘lines’
    sqar: no visible global function definition for ‘density’
    sqar: no visible global function definition for ‘plot’
    sqar: no visible global function definition for ‘heat.colors’
    sqar: no visible global function definition for ‘mcmc.list’
    sqaradap: no visible global function definition for ‘rnorm’
    sqaradap: no visible global function definition for ‘runif’
    sqaradap: no visible global function definition for ‘bw.nrd0’
    sqaradap: no visible global function definition for ‘density’
    sqaradap: no visible global function definition for ‘par’
    sqaradap: no visible global function definition for ‘plot’
    sqaradap: no visible global function definition for ‘hist’
    sqaradap: no visible global function definition for ‘lines’
    test1: no visible global function definition for ‘runif’
    test2: no visible global function definition for ‘rchisq’
    test3: no visible global function definition for ‘ppois’
    test3: no visible global function definition for ‘runif’
    test4: no visible global function definition for ‘rpois’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    EMcenso : like: warning in pnorm(the - a, log = T): partial argument
     match of 'log' to 'log.p'
    adapump: warning in rgamma(1, sha = gamma + 10 * alpha): partial
     argument match of 'sha' to 'shape'
    adapump: warning in rgamma(10, sha = data + alpha): partial argument
     match of 'sha' to 'shape'
    adapump: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
     argument match of 'sha' to 'shape'
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nro' to 'nrow'
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nco' to 'ncol'
    kscheck: warning in rgamma(1, sha = gamma + 10 * alpha): partial
     argument match of 'sha' to 'shape'
    kscheck: warning in rgamma(10, sha = data + alpha): partial argument
     match of 'sha' to 'shape'
    kscheck: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
     argument match of 'sha' to 'shape'
    logima: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of 'nro' to 'nrow'
    logima: warning in rnorm(N, m = -0.72, sd = 0.55): partial argument
     match of 'm' to 'mean'
    logima: warning in rnorm(N, m = 0.1, sd = 0.212): partial argument
     match of 'm' to 'mean'
    logima: warning in dnorm(sim[, 1], m = -0.72, sd = 0.55): partial
     argument match of 'm' to 'mean'
    logima: warning in dnorm(sim[, 2], m = 0.1, sd = 0.2121): partial
     argument match of 'm' to 'mean'
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of 'rep' to 'replace'
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of 'pro' to 'prob'
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nro' to 'nrow'
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nco' to 'ncol'
    mhmix: warning in dnorm(prop, curmean, lo = T): partial argument match
     of 'lo' to 'log'
    mhmix: warning in dnorm(the[iter, ], meanprop, lo = T): partial
     argument match of 'lo' to 'log'
    mochoice : gocho: warning in sample(c(0, 1), lga, rep = T): partial
     argument match of 'rep' to 'replace'
    pimamh : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimamh : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN
     = "*"), log = T): partial argument match of 'log' to 'log.p'
    pimamh: warning in dnorm(prop, mean = curmean, sd = scale, lo = T):
     partial argument match of 'lo' to 'log'
    pimamh: warning in dnorm(the[t - 1, ], mean = propmean, sd = scale, lo
     = T): partial argument match of 'lo' to 'log'
    pimamh: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of 'nro' to 'nrow'
    pimax : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : newlike: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN
     = "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : newlike: warning in pnorm(q = -a - outer(X = b, Y = da[, 2],
     FUN = "*"), log = T): partial argument match of 'log' to 'log.p'
    randogibs: warning in sample(c(-1, 0, 1), n * m, rep = T): partial
     argument match of 'rep' to 'replace'
    randogit: warning in sample(c(-1, 0, 1), n * m, rep = TRUE): partial
     argument match of 'rep' to 'replace'
    SAmix : like: no visible binding for global variable ‘da’
    betagen: no visible binding for global variable ‘x’
    challenge: no visible binding for global variable ‘challenger’
    kscheck: no visible global function definition for ‘heidel.diag’
    kscheck: no visible global function definition for ‘mcmc’
    kscheck: no visible global function definition for ‘geweke.diag’
    logima : like: no visible binding for global variable ‘Pima.tr’
    logima: no visible binding for global variable ‘Pima.tr’
    maximple: no visible global function definition for ‘h’
    mump: no visible global function definition for ‘gelman.plot’
    mump: no visible global function definition for ‘mcmc.list’
    mump: no visible global function definition for ‘mcmc’
    mump: no visible global function definition for ‘autocorr.diag’
    pimamh: no visible binding for global variable ‘Pima.tr’
    pimax: no visible binding for global variable ‘Pima.tr’
    randogibs: no visible global function definition for ‘mcmc’
    randogibs: no visible global function definition for ‘cumuplot’
    randomeff: no visible binding for global variable ‘Energy’
    sqar: no visible global function definition for ‘geweke.diag’
    sqar: no visible global function definition for ‘mcmc’
    sqar: no visible global function definition for ‘heidel.diag’
    sqar: no visible global function definition for ‘mcmc.list’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64