CRAN Package Check Results for Package mcsm

Last updated on 2014-10-21 10:49:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.04 34.52 35.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 1.01 34.55 35.56 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 75.33 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 69.76 NOTE
r-devel-osx-x86_64-clang 1.0 66.59 NOTE
r-devel-windows-ix86+x86_64 1.0 5.00 50.00 55.00 NOTE
r-patched-linux-x86_64 1.0 1.06 36.81 37.87 NOTE
r-patched-solaris-sparc 1.0 457.40 NOTE
r-patched-solaris-x86 1.0 93.40 NOTE
r-release-linux-ix86 1.0 1.38 47.86 49.24 NOTE
r-release-linux-x86_64 1.0 1.00 37.80 38.80 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-osx-x86_64-snowleopard 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 4.00 57.00 61.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 4.00 53.00 57.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘MASS’ ‘coda’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘MASS’ ‘coda’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    EMcenso : like: warning in pnorm(the - a, log = T): partial argument
     match of ‘log’ to ‘log.p’
    adapump: warning in rgamma(1, sha = gamma + 10 * alpha): partial
     argument match of ‘sha’ to ‘shape’
    adapump: warning in rgamma(10, sha = data + alpha): partial argument
     match of ‘sha’ to ‘shape’
    adapump: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
     argument match of ‘sha’ to ‘shape’
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of ‘nro’ to ‘nrow’
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of ‘nco’ to ‘ncol’
    kscheck: warning in rgamma(1, sha = gamma + 10 * alpha): partial
     argument match of ‘sha’ to ‘shape’
    kscheck: warning in rgamma(10, sha = data + alpha): partial argument
     match of ‘sha’ to ‘shape’
    kscheck: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
     argument match of ‘sha’ to ‘shape’
    logima: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of ‘nro’ to ‘nrow’
    logima: warning in rnorm(N, m = -0.72, sd = 0.55): partial argument
     match of ‘m’ to ‘mean’
    logima: warning in rnorm(N, m = 0.1, sd = 0.212): partial argument
     match of ‘m’ to ‘mean’
    logima: warning in dnorm(sim[, 1], m = -0.72, sd = 0.55): partial
     argument match of ‘m’ to ‘mean’
    logima: warning in dnorm(sim[, 2], m = 0.1, sd = 0.2121): partial
     argument match of ‘m’ to ‘mean’
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of ‘rep’ to ‘replace’
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of ‘pro’ to ‘prob’
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of ‘nro’ to ‘nrow’
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of ‘nco’ to ‘ncol’
    mhmix: warning in dnorm(prop, curmean, lo = T): partial argument match
     of ‘lo’ to ‘log’
    mhmix: warning in dnorm(the[iter, ], meanprop, lo = T): partial
     argument match of ‘lo’ to ‘log’
    mochoice : gocho: warning in sample(c(0, 1), lga, rep = T): partial
     argument match of ‘rep’ to ‘replace’
    pimamh : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of ‘log’ to ‘log.p’
    pimamh : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN
     = "*"), log = T): partial argument match of ‘log’ to ‘log.p’
    pimamh: warning in dnorm(prop, mean = curmean, sd = scale, lo = T):
     partial argument match of ‘lo’ to ‘log’
    pimamh: warning in dnorm(the[t - 1, ], mean = propmean, sd = scale, lo
     = T): partial argument match of ‘lo’ to ‘log’
    pimamh: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of ‘nro’ to ‘nrow’
    pimax : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of ‘log’ to ‘log.p’
    pimax : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of ‘log’ to ‘log.p’
    pimax : newlike: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN
     = "*"), log = T): partial argument match of ‘log’ to ‘log.p’
    pimax : newlike: warning in pnorm(q = -a - outer(X = b, Y = da[, 2],
     FUN = "*"), log = T): partial argument match of ‘log’ to ‘log.p’
    randogibs: warning in sample(c(-1, 0, 1), n * m, rep = T): partial
     argument match of ‘rep’ to ‘replace’
    randogit: warning in sample(c(-1, 0, 1), n * m, rep = TRUE): partial
     argument match of ‘rep’ to ‘replace’
    SAmix : like: no visible binding for global variable ‘da’
    betagen: no visible binding for global variable ‘x’
    challenge: no visible binding for global variable ‘challenger’
    kscheck: no visible global function definition for ‘heidel.diag’
    kscheck: no visible global function definition for ‘mcmc’
    kscheck: no visible global function definition for ‘geweke.diag’
    logima : like: no visible binding for global variable ‘Pima.tr’
    logima: no visible binding for global variable ‘Pima.tr’
    maximple: no visible global function definition for ‘h’
    mump: no visible global function definition for ‘gelman.plot’
    mump: no visible global function definition for ‘mcmc.list’
    mump: no visible global function definition for ‘mcmc’
    mump: no visible global function definition for ‘autocorr.diag’
    pimamh: no visible binding for global variable ‘Pima.tr’
    pimax: no visible binding for global variable ‘Pima.tr’
    randogibs: no visible global function definition for ‘mcmc’
    randogibs: no visible global function definition for ‘cumuplot’
    randomeff: no visible binding for global variable ‘Energy’
    sqar: no visible global function definition for ‘geweke.diag’
    sqar: no visible global function definition for ‘mcmc’
    sqar: no visible global function definition for ‘heidel.diag’
    sqar: no visible global function definition for ‘mcmc.list’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.0
Check: R code for possible problems
Result: NOTE
    EMcenso : like: warning in pnorm(the - a, log = T): partial argument
     match of 'log' to 'log.p'
    adapump: warning in rgamma(1, sha = gamma + 10 * alpha): partial
     argument match of 'sha' to 'shape'
    adapump: warning in rgamma(10, sha = data + alpha): partial argument
     match of 'sha' to 'shape'
    adapump: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
     argument match of 'sha' to 'shape'
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nro' to 'nrow'
    gibbsmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nco' to 'ncol'
    kscheck: warning in rgamma(1, sha = gamma + 10 * alpha): partial
     argument match of 'sha' to 'shape'
    kscheck: warning in rgamma(10, sha = data + alpha): partial argument
     match of 'sha' to 'shape'
    kscheck: warning in rgamma(1, sha = gamma + (10 * alpha)): partial
     argument match of 'sha' to 'shape'
    logima: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of 'nro' to 'nrow'
    logima: warning in rnorm(N, m = -0.72, sd = 0.55): partial argument
     match of 'm' to 'mean'
    logima: warning in rnorm(N, m = 0.1, sd = 0.212): partial argument
     match of 'm' to 'mean'
    logima: warning in dnorm(sim[, 1], m = -0.72, sd = 0.55): partial
     argument match of 'm' to 'mean'
    logima: warning in dnorm(sim[, 2], m = 0.1, sd = 0.2121): partial
     argument match of 'm' to 'mean'
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of 'rep' to 'replace'
    logima: warning in sample(1:N, N, rep = TRUE, pro = weit): partial
     argument match of 'pro' to 'prob'
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nro' to 'nrow'
    mhmix: warning in matrix(0, nco = 250, nro = 250): partial argument
     match of 'nco' to 'ncol'
    mhmix: warning in dnorm(prop, curmean, lo = T): partial argument match
     of 'lo' to 'log'
    mhmix: warning in dnorm(the[iter, ], meanprop, lo = T): partial
     argument match of 'lo' to 'log'
    mochoice : gocho: warning in sample(c(0, 1), lga, rep = T): partial
     argument match of 'rep' to 'replace'
    pimamh : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimamh : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN
     = "*"), log = T): partial argument match of 'log' to 'log.p'
    pimamh: warning in dnorm(prop, mean = curmean, sd = scale, lo = T):
     partial argument match of 'lo' to 'log'
    pimamh: warning in dnorm(the[t - 1, ], mean = propmean, sd = scale, lo
     = T): partial argument match of 'lo' to 'log'
    pimamh: warning in matrix(0, ncol = 130, nro = 100): partial argument
     match of 'nro' to 'nrow'
    pimax : like: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : like: warning in pnorm(q = -a - outer(X = b, Y = da[, 2], FUN =
     "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : newlike: warning in pnorm(q = a + outer(X = b, Y = da[, 2], FUN
     = "*"), log = T): partial argument match of 'log' to 'log.p'
    pimax : newlike: warning in pnorm(q = -a - outer(X = b, Y = da[, 2],
     FUN = "*"), log = T): partial argument match of 'log' to 'log.p'
    randogibs: warning in sample(c(-1, 0, 1), n * m, rep = T): partial
     argument match of 'rep' to 'replace'
    randogit: warning in sample(c(-1, 0, 1), n * m, rep = TRUE): partial
     argument match of 'rep' to 'replace'
    SAmix : like: no visible binding for global variable ‘da’
    betagen: no visible binding for global variable ‘x’
    challenge: no visible binding for global variable ‘challenger’
    maximple: no visible global function definition for ‘h’
    randomeff: no visible binding for global variable ‘Energy’
Flavors: r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'MASS' 'coda'
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard