CRAN Package Check Results for Package memgene

Last updated on 2015-08-31 04:48:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 5.24 67.43 72.67 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 5.11 64.37 69.48 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 152.45 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 148.39 NOTE
r-devel-osx-x86_64-clang 1.0 122.84 NOTE
r-devel-windows-ix86+x86_64 1.0 21.00 127.00 148.00 NOTE
r-patched-linux-x86_64 1.0 5.45 67.94 73.39 NOTE
r-patched-solaris-sparc 1.0 947.20 NOTE
r-patched-solaris-x86 1.0 221.60 NOTE
r-release-linux-x86_64 1.0 5.76 68.53 74.30 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 22.00 126.00 148.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 34.00 166.00 200.00 NOTE

Check Details

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘adegenet’ ‘geosphere’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.mgLandscape
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    codomToPropShared: no visible global function definition for
     ‘df2genind’
    codomToPropShared: no visible global function definition for
     ‘propShared’
    mgLandscape: no visible global function definition for ‘dist’
    mgLandscape: no visible global function definition for ‘SpatialPoints’
    mgLandscape: no visible global function definition for ‘na.omit’
    mgMEM : .distTransform: no visible global function definition for
     ‘as.dist’
    mgMap : sr.value: no visible global function definition for ‘par’
    mgMap : sr.value : fun: no visible global function definition for
     ‘segments’
    mgMap : sr.value : fun: no visible global function definition for ‘par’
    mgMap : sr.value: no visible global function definition for ‘symbols’
    mgMap : sr.value: no visible global function definition for ‘gray’
    mgMap : sr.value: no visible global function definition for ‘points’
    mgMap : sr.value: no visible global function definition for ‘box’
    mgMap : scatterutil.legend.bw.circle: no visible global function
     definition for ‘par’
    mgMap : scatterutil.legend.bw.circle: no visible global function
     definition for ‘strheight’
    mgMap : scatterutil.legend.bw.circle: no visible global function
     definition for ‘strwidth’
    mgMap : scatterutil.legend.bw.circle: no visible global function
     definition for ‘rect’
    mgMap : scatterutil.legend.bw.circle: no visible global function
     definition for ‘symbols’
    mgMap : scatterutil.legend.circle.grey: no visible global function
     definition for ‘par’
    mgMap : scatterutil.legend.circle.grey: no visible global function
     definition for ‘strwidth’
    mgMap : scatterutil.legend.circle.grey: no visible global function
     definition for ‘strheight’
    mgMap : scatterutil.legend.circle.grey: no visible global function
     definition for ‘rect’
    mgMap : scatterutil.legend.circle.grey: no visible global function
     definition for ‘symbols’
    mgMap : scatterutil.legend.circle.grey: no visible global function
     definition for ‘gray’
    mgMap: no visible global function definition for ‘dev.new’
    mgMap: no visible global function definition for ‘par’
    mgMap: no visible global function definition for ‘plot’
    mgQuick: no visible global function definition for ‘distm’
    mgQuick: no visible binding for global variable ‘distMeeus’
    mgQuick: no visible global function definition for ‘dist’
    mgQuick: no visible global function definition for ‘na.omit’
    mgRDA : .genRDA: no visible global function definition for ‘princomp’
    Undefined global functions or variables:
     SpatialPoints as.dist box dev.new df2genind dist distMeeus distm gray
     na.omit par plot points princomp propShared rect segments strheight
     strwidth symbols
    Consider adding
     importFrom("grDevices", "dev.new", "gray")
     importFrom("graphics", "box", "par", "plot", "points", "rect",
     "segments", "strheight", "strwidth", "symbols")
     importFrom("stats", "as.dist", "dist", "na.omit", "princomp")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    codomToPropShared: no visible global function definition for
     ‘df2genind’
    codomToPropShared: no visible global function definition for
     ‘propShared’
    mgLandscape: no visible global function definition for ‘SpatialPoints’
    mgQuick: no visible global function definition for ‘distm’
    mgQuick: no visible binding for global variable ‘distMeeus’
    Undefined global functions or variables:
     SpatialPoints df2genind distMeeus distm propShared
Flavor: r-devel-osx-x86_64-clang

Version: 1.0
Check: R code for possible problems
Result: NOTE
    codomToPropShared: no visible global function definition for
     ‘df2genind’
    codomToPropShared: no visible global function definition for
     ‘propShared’
    mgLandscape: no visible global function definition for ‘SpatialPoints’
    mgQuick: no visible global function definition for ‘distm’
    mgQuick: no visible binding for global variable ‘distMeeus’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64