CRAN Package Check Results for Package metaMA

Last updated on 2017-08-18 04:46:48.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1.2 1.35 33.49 34.84 NOTE
r-devel-linux-x86_64-debian-gcc 3.1.2 1.53 32.92 34.45 NOTE
r-devel-linux-x86_64-fedora-clang 3.1.2 64.88 NOTE
r-devel-linux-x86_64-fedora-gcc 3.1.2 62.45 NOTE
r-devel-windows-ix86+x86_64 3.1.2 5.00 79.00 84.00 NOTE
r-patched-linux-x86_64 3.1.2 1.37 33.18 34.55 NOTE
r-patched-solaris-x86 3.1.2 81.30 NOTE --no-vignettes
r-release-linux-x86_64 3.1.2 1.40 32.99 34.39 NOTE
r-release-windows-ix86+x86_64 3.1.2 5.00 58.00 63.00 NOTE
r-release-osx-x86_64 3.1.2 NOTE
r-oldrel-windows-ix86+x86_64 3.1.2 4.00 80.00 84.00 NOTE
r-oldrel-osx-x86_64 3.1.2 NOTE

Check Details

Version: 3.1.2
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.1.2
Check: R code for possible problems
Result: NOTE
    EScombination: no visible global function definition for ‘model.matrix’
    EScombination: no visible global function definition for ‘p.adjust’
    EScombination: no visible global function definition for ‘pt’
    EScombination.paired: no visible global function definition for
     ‘p.adjust’
    EScombination.paired: no visible global function definition for ‘pt’
    calcfit2Diffrep: no visible global function definition for
     ‘model.matrix’
    directEScombi: no visible global function definition for ‘pnorm’
    directEScombi: no visible global function definition for ‘p.adjust’
    directpvalcombi : fstatmeta: no visible global function definition for
     ‘qnorm’
    directpvalcombi: no visible global function definition for ‘pnorm’
    directpvalcombi: no visible global function definition for ‘p.adjust’
    pvalcombination: no visible global function definition for
     ‘model.matrix’
    pvalcombination: no visible global function definition for ‘p.adjust’
    pvalcombination: no visible global function definition for ‘pt’
    pvalcombination.paired: no visible global function definition for
     ‘p.adjust’
    pvalcombination.paired: no visible global function definition for ‘pt’
    Undefined global functions or variables:
     model.matrix p.adjust pnorm pt qnorm
    Consider adding
     importFrom("stats", "model.matrix", "p.adjust", "pnorm", "pt", "qnorm")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.1.2
Check: installed package size
Result: NOTE
     installed size is 9.5Mb
     sub-directories of 1Mb or more:
     data 9.1Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 3.1.2
Flags: --no-vignettes
Check: installed package size
Result: NOTE
     installed size is 9.5Mb
     sub-directories of 1Mb or more:
     data 9.1Mb
Flavor: r-patched-solaris-x86

Version: 3.1.2
Flags: --no-vignettes
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavor: r-patched-solaris-x86

Version: 3.1.2
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    EScombination: no visible global function definition for ‘model.matrix’
    EScombination: no visible global function definition for ‘p.adjust’
    EScombination: no visible global function definition for ‘pt’
    EScombination.paired: no visible global function definition for
     ‘p.adjust’
    EScombination.paired: no visible global function definition for ‘pt’
    calcfit2Diffrep: no visible global function definition for
     ‘model.matrix’
    directEScombi: no visible global function definition for ‘pnorm’
    directEScombi: no visible global function definition for ‘p.adjust’
    directpvalcombi : fstatmeta: no visible global function definition for
     ‘qnorm’
    directpvalcombi: no visible global function definition for ‘pnorm’
    directpvalcombi: no visible global function definition for ‘p.adjust’
    pvalcombination: no visible global function definition for
     ‘model.matrix’
    pvalcombination: no visible global function definition for ‘p.adjust’
    pvalcombination: no visible global function definition for ‘pt’
    pvalcombination.paired: no visible global function definition for
     ‘p.adjust’
    pvalcombination.paired: no visible global function definition for ‘pt’
    Undefined global functions or variables:
     model.matrix p.adjust pnorm pt qnorm
    Consider adding
     importFrom("stats", "model.matrix", "p.adjust", "pnorm", "pt", "qnorm")
    to your NAMESPACE file.
Flavor: r-patched-solaris-x86

Version: 3.1.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘GEOquery’ ‘org.Hs.eg.db’ ‘annaffy’ ‘hgu133plus2.db’ ‘hgu133a.db’
     ‘hgu95av2.db’
Flavor: r-release-osx-x86_64

Version: 3.1.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'metaMA.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `subfigure.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.12 \usepackage
     {amsmath}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64

Version: 3.1.2
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘hgu133plus2.db’ ‘hgu133a.db’ ‘hgu95av2.db’
Flavor: r-oldrel-osx-x86_64