CRAN Package Check Results for Package mgcv

Last updated on 2015-07-02 23:47:20.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.8-6 29.00 177.10 206.10 NOTE
r-devel-linux-x86_64-debian-gcc 1.8-6 35.03 174.46 209.48 NOTE
r-devel-linux-x86_64-fedora-clang 1.8-6 385.71 NOTE
r-devel-linux-x86_64-fedora-gcc 1.8-6 360.57 NOTE
r-devel-osx-x86_64-clang 1.8-6 340.67 OK
r-patched-linux-x86_64 1.8-6 31.95 177.42 209.36 OK
r-patched-solaris-sparc 1.8-6 OK
r-patched-solaris-x86 1.8-6 OK
r-release-linux-x86_64 1.8-6 37.16 177.61 214.76 OK
r-release-osx-x86_64-mavericks 1.8-6 OK
r-release-windows-ix86+x86_64 1.8-6 71.00 403.00 474.00 OK
r-oldrel-windows-ix86+x86_64 1.8-6 85.00 380.00 465.00 OK

Check Details

Version: 1.8-6
Check: R code for possible problems
Result: NOTE
    Tweedie: no visible global function definition for ‘power’
    Tweedie: no visible global function definition for ‘make.link’
    Tweedie : rd: no visible global function definition for ‘rgamma’
    bam: Error while checking: invalid ‘envir’ argument
    bam.fit: no visible global function definition for ‘var’
    bam.update: no visible global function definition for ‘model.frame’
    bam.update: no visible binding for global variable ‘weights’
    betar: no visible global function definition for ‘make.link’
    betar : saturated.ll : gbh: no visible global function definition for
     ‘dbeta’
    betar : rd: no visible global function definition for ‘rbeta’
    betar : qf: no visible global function definition for ‘qbeta’
    bfgs : zoom: no visible global function definition for ‘fitted’
    bfgs : zoom: no visible global function definition for ‘coef’
    bfgs: no visible global function definition for ‘coef’
    bgam.fit: Error while checking: invalid ‘envir’ argument
    bgam.fit2: Error while checking: invalid ‘envir’ argument
    coef.pdIdnot: no visible global function definition for ‘formula’
    cox.ph: no visible global function definition for ‘make.link’
    deriv.check: Error while checking: invalid ‘envir’ argument
    deriv.check5: Error while checking: invalid ‘envir’ argument
    estimate.gam: no visible global function definition for ‘glm’
    fast.REML.fit: no visible global function definition for ‘coef’
    fast.REML.fit: no visible global function definition for ‘lm’
    fetad.test: no visible global function definition for ‘cor’
    fetad.test: no visible global function definition for ‘abline’
    fix.family.ls : <anonymous>: no visible global function definition for
     ‘dpois’
    fix.family.ls: Error while checking: invalid ‘envir’ argument
    fix.family.qf : <anonymous>: no visible global function definition for
     ‘qpois’
    fix.family.qf : <anonymous>: no visible global function definition for
     ‘qbinom’
    fix.family.qf : <anonymous>: no visible global function definition for
     ‘qgamma’
    fix.family.qf : <anonymous>: no visible global function definition for
     ‘qnorm’
    fix.family.rd : <anonymous>: no visible global function definition for
     ‘rpois’
    fix.family.rd : <anonymous>: no visible global function definition for
     ‘rbinom’
    fix.family.rd : <anonymous>: no visible global function definition for
     ‘rgamma’
    fix.family.rd : <anonymous>: no visible global function definition for
     ‘rnorm’
    fmud.test: no visible global function definition for ‘cor’
    gam: Error while checking: invalid ‘envir’ argument
    gam.check: no visible global function definition for ‘napredict’
    gam.check: no visible global function definition for ‘qqnorm’
    gam.check: no visible global function definition for ‘fitted’
    gam.check: no visible global function definition for ‘printCoefmat’
    gam.fit: Error while checking: invalid ‘envir’ argument
    gam.fit3: Error while checking: invalid ‘envir’ argument
    gam.fit4: Error while checking: invalid ‘envir’ argument
    gam.fit5: no visible global function definition for ‘runif’
    gam.outer: no visible global function definition for ‘nlm’
    gam.outer: no visible global function definition for ‘optim’
    gam.scale: no visible global function definition for ‘median’
    gam.setup: no visible global function definition for ‘model.frame’
    gam.setup: no visible global function definition for ‘model.offset’
    gam.setup: no visible global function definition for ‘.getXlevels’
    gam.side: no visible binding for global variable ‘sd’
    gam.vcomp: no visible global function definition for ‘qnorm’
    gamSim: no visible global function definition for ‘runif’
    gamSim: no visible global function definition for ‘rnorm’
    gamSim: no visible global function definition for ‘rpois’
    gamSim: Error while checking: invalid ‘envir’ argument
    gamm: Error while checking: invalid ‘envir’ argument
    gammPQL: no visible global function definition for ‘model.offset’
    gammPQL: no visible global function definition for ‘as.formula’
    gammPQL: no visible global function definition for ‘fitted’
    gaulss: no visible global function definition for ‘make.link’
    getNumericResponse: no visible global function definition for ‘na.omit’
    initial.spg: no visible global function definition for ‘coef’
    initial.spg: no visible global function definition for ‘lm’
    interpret.gam: no visible global function definition for ‘reformulate’
    interpret.gam0: no visible global function definition for
     ‘terms.formula’
    interpret.gam0: no visible global function definition for ‘as.formula’
    interpret.gam0: no visible global function definition for ‘reformulate’
    jagam: no visible binding for global variable ‘gaussian’
    k.check: no visible global function definition for ‘coef’
    kd.vis: no visible global function definition for ‘rect’
    ldTweedie: no visible global function definition for ‘dgamma’
    liu2: no visible global function definition for ‘pchisq’
    ls.size: no visible global function definition for ‘object.size’
    magic: no visible global function definition for ‘coef’
    magic: no visible global function definition for ‘lm’
    mini.mf: no visible global function definition for ‘runif’
    mvn: no visible global function definition for ‘make.link’
    nb: no visible global function definition for ‘make.link’
    nb : rd: no visible global function definition for ‘rnbinom’
    nb : qf: no visible global function definition for ‘qnbinom’
    negbin: no visible global function definition for ‘make.link’
    negbin : rd: no visible global function definition for ‘rnbinom’
    negbin : qf: no visible global function definition for ‘qnbinom’
    newton: no visible global function definition for ‘coef’
    newton: no visible global function definition for ‘lm’
    ocat: no visible global function definition for ‘make.link’
    ocat : rd: no visible global function definition for ‘runif’
    pdConstruct.pdIdnot: no visible global function definition for
     ‘formula’
    pdConstruct.pdTens: no visible global function definition for ‘formula’
    pdConstruct.pdTens: no visible global function definition for ‘lm’
    pdConstruct.pdTens: no visible global function definition for ‘coef’
    pdFactor.pdTens: no visible global function definition for ‘formula’
    pdMatrix.pdTens: no visible global function definition for ‘formula’
    plot.gam: no visible global function definition for ‘dev.interactive’
    plot.gam: no visible global function definition for ‘devAskNewPage’
    plot.gam: no visible global function definition for ‘termplot’
    plot.mgcv.smooth : sp.contour: no visible global function definition
     for ‘median’
    plot.mgcv.smooth : sp.contour: no visible global function definition
     for ‘title’
    plot.mgcv.smooth: no visible global function definition for ‘image’
    plot.random.effect: no visible global function definition for ‘qqnorm’
    plot.random.effect: no visible global function definition for ‘qqline’
    plot.soap.film: no visible global function definition for ‘rect’
    plot.soap.film: no visible global function definition for ‘image’
    plot.soap.film: no visible global function definition for ‘grey’
    plot.sos.smooth: no visible global function definition for ‘image’
    polys.plot: no visible global function definition for ‘axTicks’
    predict.bam: no visible binding for global variable ‘na.pass’
    predict.gam: no visible binding for global variable ‘na.pass’
    predict.gam: no visible global function definition for
     ‘delete.response’
    predict.gam: no visible global function definition for ‘reformulate’
    predict.gam: no visible global function definition for ‘model.frame’
    predict.gam: no visible global function definition for
     ‘.checkMFClasses’
    predict.gam: no visible global function definition for ‘model.offset’
    predict.gam: no visible global function definition for ‘napredict’
    predict.jam: no visible binding for global variable ‘na.pass’
    print.anova.gam: no visible global function definition for
     ‘printCoefmat’
    print.summary.gam: no visible global function definition for
     ‘printCoefmat’
    qq.gam: no visible global function definition for ‘qqnorm’
    qq.gam: no visible global function definition for ‘quantile’
    qq.gam: no visible binding for global variable ‘quantile’
    qq.gam: no visible global function definition for ‘qqplot’
    qq.gam: no visible global function definition for ‘abline’
    rTweedie: no visible global function definition for ‘rpois’
    rTweedie: no visible global function definition for ‘rgamma’
    reTest: no visible global function definition for ‘coef’
    recov: no visible global function definition for ‘coef’
    residuals.gam: no visible global function definition for ‘naresid’
    rig: no visible global function definition for ‘rnorm’
    rig: no visible global function definition for ‘runif’
    rmvn: no visible global function definition for ‘rnorm’
    s: no visible global function definition for ‘terms’
    s: no visible global function definition for ‘reformulate’
    scat: no visible global function definition for ‘make.link’
    score.transect: Error while checking: invalid ‘envir’ argument
    setup.soap: no visible global function definition for ‘quantile’
    setup.soap: no visible global function definition for ‘approx’
    sim2jam: no visible global function definition for ‘cov’
    simf: no visible global function definition for ‘qchisq’
    single.sp: no visible global function definition for ‘uniroot’
    smooth.construct.cr.smooth.spec: no visible global function definition
     for ‘quantile’
    smooth.construct.ds.smooth.spec: no visible global function definition
     for ‘runif’
    smooth.construct.re.smooth.spec: no visible global function definition
     for ‘as.formula’
    smooth.construct.sos.smooth.spec: no visible global function definition
     for ‘runif’
    smooth.construct.sos.smooth.spec: no visible binding for global
     variable ‘sd’
    smooth.construct.tp.smooth.spec: no visible global function definition
     for ‘runif’
    smooth2random.fs.interaction: no visible global function definition for
     ‘as.formula’
    smooth2random.fs.interaction: no visible global function definition for
     ‘as’
    smooth2random.mgcv.smooth: no visible global function definition for
     ‘as.formula’
    smooth2random.t2.smooth: no visible global function definition for
     ‘as.formula’
    smooth2random.tensor.smooth: no visible global function definition for
     ‘as.formula’
    smoothCon: no visible binding for global variable ‘var’
    smoothCon: no visible binding for global variable ‘sd’
    smoothCon: no visible global function definition for ‘sd’
    soap.basis: no visible global function definition for ‘as’
    solve.pdIdnot: no visible global function definition for ‘coef’
    sparse.model.matrix: no visible global function definition for ‘as’
    summary.gam: no visible global function definition for ‘pnorm’
    summary.gam: no visible global function definition for ‘pt’
    summary.gam: no visible global function definition for ‘pchisq’
    summary.gam: no visible global function definition for ‘pf’
    summary.gam: no visible global function definition for ‘runif’
    summary.gam: no visible global function definition for ‘var’
    t2: no visible global function definition for ‘terms’
    t2: no visible global function definition for ‘reformulate’
    te: no visible global function definition for ‘terms’
    te: no visible global function definition for ‘reformulate’
    test.gamm : compare: no visible global function definition for ‘cor’
    test.gamm : compare: no visible global function definition for ‘fitted’
    test.gamm: no visible global function definition for ‘runif’
    test.gamm: no visible global function definition for ‘rnorm’
    testStat: no visible global function definition for ‘pchisq’
    testStat: no visible global function definition for ‘pf’
    tw: no visible global function definition for ‘make.link’
    tw : rd: no visible global function definition for ‘rgamma’
    variable.summary: no visible binding for global variable ‘quantile’
    variable.summary: no visible global function definition for ‘quantile’
    ziP: no visible global function definition for ‘make.link’
    ziP : rd : rzip: no visible global function definition for ‘runif’
    ziP : rd : rzip: no visible global function definition for ‘qpois’
    ziP : rd : rzip: no visible global function definition for ‘dpois’
    ziplss: no visible global function definition for ‘make.link’
    ziplss : rd : rzip: no visible global function definition for ‘runif’
    ziplss : rd : rzip: no visible global function definition for ‘qpois’
    ziplss : rd : rzip: no visible global function definition for ‘dpois’
    Undefined global functions or variables:
     .checkMFClasses .getXlevels abline approx as as.formula axTicks coef
     cor cov dbeta delete.response dev.interactive devAskNewPage dgamma
     dpois fitted formula gaussian glm grey image lm make.link median
     model.frame model.offset na.omit na.pass napredict naresid nlm
     object.size optim pchisq pf pnorm power printCoefmat pt qbeta qbinom
     qchisq qgamma qnbinom qnorm qpois qqline qqnorm qqplot quantile rbeta
     rbinom rect reformulate rgamma rnbinom rnorm rpois runif sd termplot
     terms terms.formula title uniroot var weights
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.8-6
Check: R code for possible problems
Result: NOTE
    Tweedie: no visible global function definition for ‘power’
    Tweedie: no visible global function definition for ‘make.link’
    Tweedie : rd: no visible global function definition for ‘rgamma’
    bam: Error while checking: invalid ‘envir’ argument
    bam.fit: no visible global function definition for ‘var’
    bam.update: no visible global function definition for ‘model.frame’
    bam.update: no visible binding for global variable ‘weights’
    betar: no visible global function definition for ‘make.link’
    betar : saturated.ll : gbh: no visible global function definition for
     ‘dbeta’
    betar : rd: no visible global function definition for ‘rbeta’
    betar : qf: no visible global function definition for ‘qbeta’
    bfgs : zoom: no visible global function definition for ‘fitted’
    bfgs : zoom: no visible global function definition for ‘coef’
    bfgs: no visible global function definition for ‘coef’
    bgam.fit: Error while checking: invalid ‘envir’ argument
    bgam.fit2: Error while checking: invalid ‘envir’ argument
    coef.pdIdnot: no visible global function definition for ‘formula’
    cox.ph: no visible global function definition for ‘make.link’
    deriv.check: Error while checking: invalid ‘envir’ argument
    deriv.check5: Error while checking: invalid ‘envir’ argument
    estimate.gam: no visible global function definition for ‘glm’
    fast.REML.fit: no visible global function definition for ‘coef’
    fast.REML.fit: no visible global function definition for ‘lm’
    fetad.test: no visible global function definition for ‘cor’
    fetad.test: no visible global function definition for ‘abline’
    fix.family.ls : <anonymous>: no visible global function definition for
     ‘dpois’
    fix.family.ls: Error while checking: invalid ‘envir’ argument
    fix.family.qf : <anonymous>: no visible global function definition for
     ‘qpois’
    fix.family.qf : <anonymous>: no visible global function definition for
     ‘qbinom’
    fix.family.qf : <anonymous>: no visible global function definition for
     ‘qgamma’
    fix.family.qf : <anonymous>: no visible global function definition for
     ‘qnorm’
    fix.family.rd : <anonymous>: no visible global function definition for
     ‘rpois’
    fix.family.rd : <anonymous>: no visible global function definition for
     ‘rbinom’
    fix.family.rd : <anonymous>: no visible global function definition for
     ‘rgamma’
    fix.family.rd : <anonymous>: no visible global function definition for
     ‘rnorm’
    fmud.test: no visible global function definition for ‘cor’
    gam: Error while checking: invalid ‘envir’ argument
    gam.check: no visible global function definition for ‘napredict’
    gam.check: no visible global function definition for ‘qqnorm’
    gam.check: no visible global function definition for ‘fitted’
    gam.check: no visible global function definition for ‘printCoefmat’
    gam.fit: Error while checking: invalid ‘envir’ argument
    gam.fit3: Error while checking: invalid ‘envir’ argument
    gam.fit4: Error while checking: invalid ‘envir’ argument
    gam.fit5: no visible global function definition for ‘runif’
    gam.outer: no visible global function definition for ‘nlm’
    gam.outer: no visible global function definition for ‘optim’
    gam.scale: no visible global function definition for ‘median’
    gam.setup: no visible global function definition for ‘model.frame’
    gam.setup: no visible global function definition for ‘model.offset’
    gam.setup: no visible global function definition for ‘.getXlevels’
    gam.side: no visible binding for global variable ‘sd’
    gam.vcomp: no visible global function definition for ‘qnorm’
    gamSim: no visible global function definition for ‘runif’
    gamSim: no visible global function definition for ‘rnorm’
    gamSim: no visible global function definition for ‘rpois’
    gamSim: Error while checking: invalid ‘envir’ argument
    gamm: Error while checking: invalid ‘envir’ argument
    gammPQL: no visible global function definition for ‘model.offset’
    gammPQL: no visible global function definition for ‘as.formula’
    gammPQL: no visible global function definition for ‘fitted’
    gaulss: no visible global function definition for ‘make.link’
    getNumericResponse: no visible global function definition for ‘na.omit’
    initial.spg: no visible global function definition for ‘coef’
    initial.spg: no visible global function definition for ‘lm’
    interpret.gam: no visible global function definition for ‘reformulate’
    interpret.gam0: no visible global function definition for
     ‘terms.formula’
    interpret.gam0: no visible global function definition for ‘as.formula’
    interpret.gam0: no visible global function definition for ‘reformulate’
    jagam: no visible binding for global variable ‘gaussian’
    k.check: no visible global function definition for ‘coef’
    kd.vis: no visible global function definition for ‘rect’
    ldTweedie: no visible global function definition for ‘dgamma’
    liu2: no visible global function definition for ‘pchisq’
    ls.size: no visible global function definition for ‘object.size’
    magic: no visible global function definition for ‘coef’
    magic: no visible global function definition for ‘lm’
    mini.mf: no visible global function definition for ‘runif’
    mvn: no visible global function definition for ‘make.link’
    nb: no visible global function definition for ‘make.link’
    nb : rd: no visible global function definition for ‘rnbinom’
    nb : qf: no visible global function definition for ‘qnbinom’
    negbin: no visible global function definition for ‘make.link’
    negbin : rd: no visible global function definition for ‘rnbinom’
    negbin : qf: no visible global function definition for ‘qnbinom’
    newton: no visible global function definition for ‘coef’
    newton: no visible global function definition for ‘lm’
    ocat: no visible global function definition for ‘make.link’
    ocat : rd: no visible global function definition for ‘runif’
    pdConstruct.pdIdnot: no visible global function definition for
     ‘formula’
    pdConstruct.pdTens: no visible global function definition for ‘formula’
    pdConstruct.pdTens: no visible global function definition for ‘lm’
    pdConstruct.pdTens: no visible global function definition for ‘coef’
    pdFactor.pdTens: no visible global function definition for ‘formula’
    pdMatrix.pdTens: no visible global function definition for ‘formula’
    plot.gam: no visible global function definition for ‘dev.interactive’
    plot.gam: no visible global function definition for ‘devAskNewPage’
    plot.gam: no visible global function definition for ‘termplot’
    plot.mgcv.smooth : sp.contour: no visible global function definition
     for ‘median’
    plot.mgcv.smooth : sp.contour: no visible global function definition
     for ‘title’
    plot.mgcv.smooth: no visible global function definition for ‘image’
    plot.random.effect: no visible global function definition for ‘qqnorm’
    plot.random.effect: no visible global function definition for ‘qqline’
    plot.soap.film: no visible global function definition for ‘rect’
    plot.soap.film: no visible global function definition for ‘image’
    plot.soap.film: no visible global function definition for ‘grey’
    plot.sos.smooth: no visible global function definition for ‘image’
    polys.plot: no visible global function definition for ‘axTicks’
    predict.bam: no visible binding for global variable ‘na.pass’
    predict.gam: no visible binding for global variable ‘na.pass’
    predict.gam: no visible global function definition for
     ‘delete.response’
    predict.gam: no visible global function definition for ‘reformulate’
    predict.gam: no visible global function definition for ‘model.frame’
    predict.gam: no visible global function definition for
     ‘.checkMFClasses’
    predict.gam: no visible global function definition for ‘model.offset’
    predict.gam: no visible global function definition for ‘napredict’
    predict.jam: no visible binding for global variable ‘na.pass’
    print.anova.gam: no visible global function definition for
     ‘printCoefmat’
    print.summary.gam: no visible global function definition for
     ‘printCoefmat’
    qq.gam: no visible global function definition for ‘qqnorm’
    qq.gam: no visible global function definition for ‘quantile’
    qq.gam: no visible binding for global variable ‘quantile’
    qq.gam: no visible global function definition for ‘qqplot’
    qq.gam: no visible global function definition for ‘abline’
    rTweedie: no visible global function definition for ‘rpois’
    rTweedie: no visible global function definition for ‘rgamma’
    reTest: no visible global function definition for ‘coef’
    recov: no visible global function definition for ‘coef’
    residuals.gam: no visible global function definition for ‘naresid’
    rig: no visible global function definition for ‘rnorm’
    rig: no visible global function definition for ‘runif’
    rmvn: no visible global function definition for ‘rnorm’
    s: no visible global function definition for ‘terms’
    s: no visible global function definition for ‘reformulate’
    scat: no visible global function definition for ‘make.link’
    score.transect: Error while checking: invalid ‘envir’ argument
    setup.soap: no visible global function definition for ‘quantile’
    setup.soap: no visible global function definition for ‘approx’
    sim2jam: no visible global function definition for ‘cov’
    simf: no visible global function definition for ‘qchisq’
    single.sp: no visible global function definition for ‘uniroot’
    smooth.construct.cr.smooth.spec: no visible global function definition
     for ‘quantile’
    smooth.construct.ds.smooth.spec: no visible global function definition
     for ‘runif’
    smooth.construct.re.smooth.spec: no visible global function definition
     for ‘as.formula’
    smooth.construct.sos.smooth.spec: no visible global function definition
     for ‘runif’
    smooth.construct.sos.smooth.spec: no visible binding for global
     variable ‘sd’
    smooth.construct.tp.smooth.spec: no visible global function definition
     for ‘runif’
    smooth2random.fs.interaction: no visible global function definition for
     ‘as.formula’
    smooth2random.fs.interaction: no visible global function definition for
     ‘as’
    smooth2random.mgcv.smooth: no visible global function definition for
     ‘as.formula’
    smooth2random.t2.smooth: no visible global function definition for
     ‘as.formula’
    smooth2random.tensor.smooth: no visible global function definition for
     ‘as.formula’
    smoothCon: no visible binding for global variable ‘var’
    smoothCon: no visible binding for global variable ‘sd’
    smoothCon: no visible global function definition for ‘sd’
    soap.basis: no visible global function definition for ‘as’
    solve.pdIdnot: no visible global function definition for ‘coef’
    sparse.model.matrix: no visible global function definition for ‘as’
    summary.gam: no visible global function definition for ‘pnorm’
    summary.gam: no visible global function definition for ‘pt’
    summary.gam: no visible global function definition for ‘pchisq’
    summary.gam: no visible global function definition for ‘pf’
    summary.gam: no visible global function definition for ‘runif’
    summary.gam: no visible global function definition for ‘var’
    t2: no visible global function definition for ‘terms’
    t2: no visible global function definition for ‘reformulate’
    te: no visible global function definition for ‘terms’
    te: no visible global function definition for ‘reformulate’
    test.gamm : compare: no visible global function definition for ‘cor’
    test.gamm : compare: no visible global function definition for ‘fitted’
    test.gamm: no visible global function definition for ‘runif’
    test.gamm: no visible global function definition for ‘rnorm’
    testStat: no visible global function definition for ‘pchisq’
    testStat: no visible global function definition for ‘pf’
    tw: no visible global function definition for ‘make.link’
    tw : rd: no visible global function definition for ‘rgamma’
    variable.summary: no visible binding for global variable ‘quantile’
    variable.summary: no visible global function definition for ‘quantile’
    ziP: no visible global function definition for ‘make.link’
    ziP : rd : rzip: no visible global function definition for ‘runif’
    ziP : rd : rzip: no visible global function definition for ‘qpois’
    ziP : rd : rzip: no visible global function definition for ‘dpois’
    ziplss: no visible global function definition for ‘make.link’
    ziplss : rd : rzip: no visible global function definition for ‘runif’
    ziplss : rd : rzip: no visible global function definition for ‘qpois’
    ziplss : rd : rzip: no visible global function definition for ‘dpois’
Flavor: r-devel-linux-x86_64-debian-gcc