CRAN Package Check Results for Package mhsmm

Last updated on 2015-07-05 22:47:33.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.14 1.50 22.46 23.96 NOTE
r-devel-linux-x86_64-debian-gcc 0.4.14 1.90 21.72 23.63 NOTE
r-devel-linux-x86_64-fedora-clang 0.4.14 47.25 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4.14 43.67 NOTE
r-devel-osx-x86_64-clang 0.4.14 44.43 NOTE
r-devel-windows-ix86+x86_64 0.4.14 7.00 65.00 72.00 NOTE
r-patched-linux-x86_64 0.4.14 1.92 22.22 24.14 NOTE
r-patched-solaris-sparc 0.4.14 347.70 NOTE
r-patched-solaris-x86 0.4.14 64.20 NOTE
r-release-linux-x86_64 0.4.14 2.13 22.33 24.46 NOTE
r-release-osx-x86_64-mavericks 0.4.14 OK
r-release-windows-ix86+x86_64 0.4.14 8.00 48.00 56.00 OK
r-oldrel-windows-ix86+x86_64 0.4.14 12.00 54.00 66.00 OK

Check Details

Version: 0.4.14
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.hsmm plot.hsmm.data predict.hmm predict.hmmspec predict.hsmm
     predict.hsmmspec predict.smoothDiscrete print.hmm print.hmmspec
     print.hsmmspec print.smoothDiscrete simulate.hmmspec
     simulate.hsmmspec summary.hmm summary.hsmm summary.smoothDiscrete
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4.14
Check: R code for possible problems
Result: NOTE
    .add.states: no visible global function definition for ‘rect’
    .add.states: no visible global function definition for ‘axTicks’
    .add.states: no visible global function definition for ‘legend’
    .build_d: no visible global function definition for ‘dlnorm’
    .build_d: no visible global function definition for ‘dgamma’
    .build_d: no visible global function definition for ‘head’
    .dnbinom.hsmm.sojourn: no visible global function definition for
     ‘dnbinom’
    .dpois.hsmm.sojourn: no visible global function definition for ‘dpois’
    .fitnbinom: no visible global function definition for ‘tail’
    .fitnbinom : fun1: no visible global function definition for
     ‘weighted.mean’
    .fitnbinom : fun1: no visible global function definition for ‘cov.wt’
    .fitnbinom : fun1 : densfun: no visible global function definition for
     ‘dnbinom’
    .fitnbinom : fun1: no visible global function definition for ‘optim’
    .fitnbinom: no visible global function definition for ‘weighted.mean’
    .fitnbinom: no visible global function definition for ‘cov.wt’
    .fitnbinom : densfun: no visible global function definition for
     ‘dnbinom’
    .fitnbinom: no visible global function definition for ‘optim’
    .logdistrfit: no visible global function definition for ‘uniroot’
    .rnbinom.hsmm.sojourn: no visible global function definition for
     ‘rnbinom’
    .rpois.hsmm.sojourn: no visible global function definition for ‘rpois’
    .sim.mhsmm: no visible global function definition for ‘dgamma’
    .sim.mhsmm: no visible global function definition for ‘dlnorm’
    addStates: no visible global function definition for ‘axTicks’
    addStates : draw.it: no visible global function definition for ‘rect’
    addStates: no visible global function definition for ‘legend’
    dnorm.hsmm: no visible global function definition for ‘dnorm’
    dpois.hsmm: no visible global function definition for ‘dpois’
    gammafit: no visible global function definition for ‘cov.wt’
    gammafit: no visible global function definition for ‘weighted.mean’
    hsmmfit: no visible global function definition for ‘approx’
    hsmmfit: no visible global function definition for ‘density’
    hsmmfit: no visible global function definition for ‘tail’
    hsmmfit: no visible global function definition for ‘dgamma’
    hsmmfit: no visible global function definition for ‘weighted.mean’
    hsmmfit: no visible global function definition for ‘cov.wt’
    hsmmfit: no visible global function definition for ‘dlnorm’
    mstep.mvnorm: no visible global function definition for ‘cov.wt’
    mstep.norm: no visible global function definition for ‘cov.wt’
    mstep.pois: no visible global function definition for ‘weighted.mean’
    plot.hsmm: no visible global function definition for ‘plot’
    plot.hsmm: no visible global function definition for ‘lines’
    plot.hsmm: no visible global function definition for ‘legend’
    plot.hsmm.data: no visible global function definition for ‘plot’
    plot.hsmm.data: no visible global function definition for ‘ts’
    plot.hsmm.data: no visible global function definition for ‘axTicks’
    plot.hsmm.data: no visible global function definition for ‘abline’
    predict.hmmspec: no visible global function definition for ‘predict’
    predict.hsmmspec: no visible global function definition for ‘predict’
    predict.smoothDiscrete: no visible global function definition for
     ‘predict’
    print.smoothDiscrete: no visible global function definition for ‘str’
    rnorm.hsmm: no visible global function definition for ‘rnorm’
    rpois.hsmm: no visible global function definition for ‘rpois’
    simulate.hsmmspec : fn: no visible global function definition for
     ‘rgamma’
    smooth.discrete: no visible global function definition for ‘predict’
    Undefined global functions or variables:
     abline approx axTicks cov.wt density dgamma dlnorm dnbinom dnorm
     dpois head legend lines optim plot predict rect rgamma rnbinom rnorm
     rpois str tail ts uniroot weighted.mean
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64