CRAN Package Check Results for Package mhsmm

Last updated on 2015-08-03 05:47:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.14 1.64 22.87 24.51 NOTE
r-devel-linux-x86_64-debian-gcc 0.4.14 1.88 22.48 24.37 NOTE
r-devel-linux-x86_64-fedora-clang 0.4.14 50.06 NOTE
r-devel-linux-x86_64-fedora-gcc 0.4.14 46.74 NOTE
r-devel-osx-x86_64-clang 0.4.14 45.44 NOTE
r-devel-windows-ix86+x86_64 0.4.14 8.00 50.00 58.00 NOTE
r-patched-linux-x86_64 0.4.14 1.91 22.94 24.84 NOTE
r-patched-solaris-sparc 0.4.14 320.50 NOTE
r-patched-solaris-x86 0.4.14 65.80 NOTE
r-release-linux-x86_64 0.4.14 1.88 22.68 24.56 NOTE
r-release-osx-x86_64-mavericks 0.4.14 OK
r-release-windows-ix86+x86_64 0.4.14 14.00 51.00 65.00 OK
r-oldrel-windows-ix86+x86_64 0.4.14 14.00 52.00 66.00 OK

Check Details

Version: 0.4.14
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.hsmm plot.hsmm.data predict.hmm predict.hmmspec predict.hsmm
     predict.hsmmspec predict.smoothDiscrete print.hmm print.hmmspec
     print.hsmmspec print.smoothDiscrete simulate.hmmspec
     simulate.hsmmspec summary.hmm summary.hsmm summary.smoothDiscrete
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.4.14
Check: R code for possible problems
Result: NOTE
    .add.states: no visible global function definition for ‘rect’
    .add.states: no visible global function definition for ‘axTicks’
    .add.states: no visible global function definition for ‘legend’
    .build_d: no visible global function definition for ‘dlnorm’
    .build_d: no visible global function definition for ‘dgamma’
    .build_d: no visible global function definition for ‘head’
    .dnbinom.hsmm.sojourn: no visible global function definition for
     ‘dnbinom’
    .dpois.hsmm.sojourn: no visible global function definition for ‘dpois’
    .fitnbinom: no visible global function definition for ‘tail’
    .fitnbinom : fun1: no visible global function definition for
     ‘weighted.mean’
    .fitnbinom : fun1: no visible global function definition for ‘cov.wt’
    .fitnbinom : fun1 : densfun: no visible global function definition for
     ‘dnbinom’
    .fitnbinom : fun1: no visible global function definition for ‘optim’
    .fitnbinom: no visible global function definition for ‘weighted.mean’
    .fitnbinom: no visible global function definition for ‘cov.wt’
    .fitnbinom : densfun: no visible global function definition for
     ‘dnbinom’
    .fitnbinom: no visible global function definition for ‘optim’
    .logdistrfit: no visible global function definition for ‘uniroot’
    .rnbinom.hsmm.sojourn: no visible global function definition for
     ‘rnbinom’
    .rpois.hsmm.sojourn: no visible global function definition for ‘rpois’
    .sim.mhsmm: no visible global function definition for ‘dgamma’
    .sim.mhsmm: no visible global function definition for ‘dlnorm’
    addStates: no visible global function definition for ‘axTicks’
    addStates : draw.it: no visible global function definition for ‘rect’
    addStates: no visible global function definition for ‘legend’
    dnorm.hsmm: no visible global function definition for ‘dnorm’
    dpois.hsmm: no visible global function definition for ‘dpois’
    gammafit: no visible global function definition for ‘cov.wt’
    gammafit: no visible global function definition for ‘weighted.mean’
    hsmmfit: no visible global function definition for ‘approx’
    hsmmfit: no visible global function definition for ‘density’
    hsmmfit: no visible global function definition for ‘tail’
    hsmmfit: no visible global function definition for ‘dgamma’
    hsmmfit: no visible global function definition for ‘weighted.mean’
    hsmmfit: no visible global function definition for ‘cov.wt’
    hsmmfit: no visible global function definition for ‘dlnorm’
    mstep.mvnorm: no visible global function definition for ‘cov.wt’
    mstep.norm: no visible global function definition for ‘cov.wt’
    mstep.pois: no visible global function definition for ‘weighted.mean’
    plot.hsmm: no visible global function definition for ‘plot’
    plot.hsmm: no visible global function definition for ‘lines’
    plot.hsmm: no visible global function definition for ‘legend’
    plot.hsmm.data: no visible global function definition for ‘plot’
    plot.hsmm.data: no visible global function definition for ‘ts’
    plot.hsmm.data: no visible global function definition for ‘axTicks’
    plot.hsmm.data: no visible global function definition for ‘abline’
    predict.hmmspec: no visible global function definition for ‘predict’
    predict.hsmmspec: no visible global function definition for ‘predict’
    predict.smoothDiscrete: no visible global function definition for
     ‘predict’
    print.smoothDiscrete: no visible global function definition for ‘str’
    rnorm.hsmm: no visible global function definition for ‘rnorm’
    rpois.hsmm: no visible global function definition for ‘rpois’
    simulate.hsmmspec : fn: no visible global function definition for
     ‘rgamma’
    smooth.discrete: no visible global function definition for ‘predict’
    Undefined global functions or variables:
     abline approx axTicks cov.wt density dgamma dlnorm dnbinom dnorm
     dpois head legend lines optim plot predict rect rgamma rnbinom rnorm
     rpois str tail ts uniroot weighted.mean
    Consider adding
     importFrom("graphics", "abline", "axTicks", "legend", "lines", "plot",
     "rect")
     importFrom("stats", "approx", "cov.wt", "density", "dgamma", "dlnorm",
     "dnbinom", "dnorm", "dpois", "optim", "predict", "rgamma",
     "rnbinom", "rnorm", "rpois", "ts", "uniroot",
     "weighted.mean")
     importFrom("utils", "head", "str", "tail")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64