CRAN Package Check Results for Package micompr

Last updated on 2019-06-19 18:52:44 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.0 3.52 127.97 131.49 OK
r-devel-linux-x86_64-debian-gcc 1.1.0 2.84 103.58 106.42 OK
r-devel-linux-x86_64-fedora-clang 1.1.0 159.26 OK
r-devel-linux-x86_64-fedora-gcc 1.1.0 154.19 OK
r-devel-windows-ix86+x86_64 1.1.0 12.00 180.00 192.00 OK
r-patched-linux-x86_64 1.1.0 2.95 127.16 130.11 OK
r-patched-solaris-x86 1.1.0 233.20 OK
r-release-linux-x86_64 1.1.0 3.72 128.26 131.98 OK
r-release-windows-ix86+x86_64 1.1.0 11.00 190.00 201.00 OK
r-release-osx-x86_64 1.1.0 ERROR
r-oldrel-windows-ix86+x86_64 1.1.0 6.00 174.00 180.00 OK
r-oldrel-osx-x86_64 1.1.0 ERROR

Check Details

Version: 1.1.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘biotools’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.1.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘biotools’
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.1.0
Check: examples
Result: ERROR
    Running examples in ‘micompr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: assumptions.cmpoutput
    > ### Title: Get assumptions for parametric tests performed on output
    > ### comparisons
    > ### Aliases: assumptions.cmpoutput
    >
    > ### ** Examples
    >
    >
    > # Create a cmpoutput object from the provided datasets
    > cmp <- cmpoutput("All", 0.9, pphpc_ok$data[["All"]], pphpc_ok$obs_lvls)
    >
    > # Get the assumptions for the parametric tests performed in cmp
    > acmp <- assumptions(cmp)
    sROC 0.1-2 loaded
    MANOVA assumptions require 'MVN' and 'biotools' packages.
    Error in `*tmp*`[[i]] : subscript out of bounds
    Calls: assumptions -> assumptions.cmpoutput
    Execution halted
Flavors: r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [20s/46s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     subscript out of bounds
     1: assumptions(mic1a) at testthat/test_micomp.R:281
     2: assumptions.micomp(mic1a)
     3: lapply(obj, function(x) assumptions(x))
     4: FUN(X[[i]], ...)
     5: assumptions(x)
     6: assumptions.cmpoutput(x)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 363 SKIPPED: 0 FAILED: 2
     1. Error: assumptions.cmpoutput creates the correct object (@test_cmpoutput.R#214)
     2. Error: micomp assumptions have the correct properties (@test_micomp.R#281)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-release-osx-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘paper.Rnw’ using knitr
    Quitting from lines 341-342 (paper.Rnw)
    Error: processing vignette 'paper.Rnw' failed with diagnostics:
    subscript out of bounds
    --- failed re-building ‘paper.Rnw’
    
    --- re-building ‘tolatex-examples.Rnw’ using knitr
    Warning in wilcox.test.default(x = c(-2.17390550005803e-11, -2.17097451127302e-11, :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = c(2.13309370167281e-11, 2.12594386539422e-11, :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = c(1.99236183107132e-11, 1.97388771994156e-11, :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = c(1.00897068477934e-12, 1.02406971791424e-12, :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = c(8.95727936267576e-13, 8.4909856923332e-13, :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = c(9.80548975348938e-13, 8.81072992342524e-13, :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = c(5.90887339058099e-11, 6.09077233093558e-11, :
     cannot compute exact p-value with ties
    Warning in wilcox.test.default(x = c(9.97119053991469e-15, 9.92695509127728e-15, :
     cannot compute exact p-value with ties
    --- finished re-building ‘tolatex-examples.Rnw’
    
    SUMMARY: processing the following file failed:
     ‘paper.Rnw’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-release-osx-x86_64

Version: 1.1.0
Check: tests
Result: ERROR
     Running ‘testthat.R’ [19s/31s]
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     subscript out of bounds
     1: assumptions(mic1a) at testthat/test_micomp.R:281
     2: assumptions.micomp(mic1a)
     3: lapply(obj, function(x) assumptions(x))
     4: FUN(X[[i]], ...)
     5: assumptions(x)
     6: assumptions.cmpoutput(x)
    
     ══ testthat results ═══════════════════════════════════════════════════════════
     OK: 363 SKIPPED: 0 FAILED: 2
     1. Error: assumptions.cmpoutput creates the correct object (@test_cmpoutput.R#214)
     2. Error: micomp assumptions have the correct properties (@test_micomp.R#281)
    
     Error: testthat unit tests failed
     Execution halted
Flavor: r-oldrel-osx-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Quitting from lines 341-342 (paper.Rnw)
    Error: processing vignette 'paper.Rnw' failed with diagnostics:
    subscript out of bounds
    Execution halted
Flavor: r-oldrel-osx-x86_64