CRAN Package Check Results for Package micropan

Last updated on 2019-12-10 17:50:06 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 32.62 69.28 101.90 OK
r-devel-linux-x86_64-debian-gcc 1.2 20.15 51.60 71.75 OK
r-devel-linux-x86_64-fedora-clang 1.2 130.50 OK
r-devel-linux-x86_64-fedora-gcc 1.2 120.42 OK
r-devel-windows-ix86+x86_64 1.2 58.00 160.00 218.00 OK
r-devel-windows-ix86+x86_64-gcc8 1.2 55.00 174.00 229.00 OK
r-patched-linux-x86_64 1.2 23.76 50.75 74.51 ERROR
r-patched-solaris-x86 1.2 157.80 OK
r-release-linux-x86_64 1.2 23.19 62.82 86.01 OK
r-release-windows-ix86+x86_64 1.2 50.00 121.00 171.00 OK
r-release-osx-x86_64 1.2 OK
r-oldrel-windows-ix86+x86_64 1.2 44.00 114.00 158.00 OK
r-oldrel-osx-x86_64 1.2 OK

Check Details

Version: 1.2
Check: examples
Result: ERROR
    Running examples in ‘micropan-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: entrezDownload
    > ### Title: Downloading genome data
    > ### Aliases: entrezDownload
    >
    > ### ** Examples
    >
    > # Accession numbers for the chromosome and plasmid of Buchnera aphidicola, strain APS
    > acc <- "BA000003.2,AP001071.1"
    > tf <- tempfile(pattern="Buchnera_aphidicola",fileext=".fasta")
    > txt <- entrezDownload(acc,out.file=tf)
    Downloading genome...Warning in url(adr, open = "rt") :
     cannot open URL 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=BA000003.2,AP001071.1&retmode=text&rettype=fasta': HTTP status was '502 Bad Gateway'
    Error in url(adr, open = "rt") :
     cannot open the connection to 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nucleotide&id=BA000003.2,AP001071.1&retmode=text&rettype=fasta'
    Calls: entrezDownload -> url
    Execution halted
Flavor: r-patched-linux-x86_64