CRAN Package Check Results for Package minPtest

Last updated on 2017-04-26 09:47:45.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.7 2.60 40.61 43.21 NOTE
r-devel-linux-x86_64-debian-gcc 1.7 2.50 40.45 42.95 NOTE
r-devel-linux-x86_64-fedora-clang 1.7 96.15 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.7 92.05 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.7 10.00 80.00 90.00 NOTE
r-patched-linux-x86_64 1.7 2.68 39.94 42.62 NOTE
r-patched-solaris-sparc 1.7 563.50 NOTE
r-patched-solaris-x86 1.7 122.70 NOTE
r-release-linux-x86_64 1.7 2.67 40.03 42.69 NOTE
r-release-windows-ix86+x86_64 1.7 9.00 86.00 95.00 NOTE
r-release-osx-x86_64 1.7 WARN
r-oldrel-windows-ix86+x86_64 1.7 5.00 90.00 95.00 NOTE
r-oldrel-osx-x86_64 1.7 NOTE

Check Details

Version: 1.7
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘parallel’ ‘snowfall’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.7
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     summary.minPtest
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.7
Check: R code for possible problems
Result: NOTE
    generateSNPs : sim.block: no visible global function definition for
     ‘rbinom’
    generateSNPs : <anonymous>: no visible global function definition for
     ‘rbinom’
    minPtest: no visible global function definition for ‘sfIsRunning’
    minPtest: no visible global function definition for ‘sfInit’
    minPtest: no visible global function definition for ‘sfLibrary’
    minPtest: no visible global function definition for ‘sfExport’
    minPtest : p_valfunc: no visible global function definition for
     ‘as.formula’
    minPtest : p_valfunc: no visible global function definition for ‘glm’
    minPtest : p_valfunc: no visible binding for global variable ‘binomial’
    minPtest : perrfunc : <anonymous>: no visible global function
     definition for ‘as.formula’
    minPtest : perrfunc : <anonymous>: no visible global function
     definition for ‘glm’
    minPtest : perrfunc : <anonymous>: no visible binding for global
     variable ‘binomial’
    minPtest : p_valfunc: no visible global function definition for
     ‘pchisq’
    minPtest : perrfunc : <anonymous>: no visible global function
     definition for ‘pchisq’
    minPtest: no visible global function definition for ‘sfClusterApplyLB’
    minPtest: no visible global function definition for ‘mclapply’
    minPtest: no visible global function definition for ‘sfStop’
    minPtest: no visible global function definition for ‘p.adjust’
    plot.minPtest: no visible global function definition for ‘plot’
    plot.minPtest: no visible global function definition for ‘points’
    plot.minPtest: no visible global function definition for ‘axis’
    plot.minPtest: no visible global function definition for ‘box’
    plot.minPtest: no visible global function definition for ‘median’
    plot.minPtest: no visible global function definition for ‘par’
    plot.minPtest: no visible global function definition for ‘lines’
    plot.minPtest: no visible global function definition for ‘mtext’
    Undefined global functions or variables:
     as.formula axis binomial box glm lines mclapply median mtext p.adjust
     par pchisq plot points rbinom sfClusterApplyLB sfExport sfInit
     sfIsRunning sfLibrary sfStop
    Consider adding
     importFrom("graphics", "axis", "box", "lines", "mtext", "par", "plot",
     "points")
     importFrom("stats", "as.formula", "binomial", "glm", "median",
     "p.adjust", "pchisq", "rbinom")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.7
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘parallel’ ‘snowfall’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.7
Flags: --no-stop-on-test-error
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     summary.minPtest
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.7
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    generateSNPs : sim.block: no visible global function definition for
     ‘rbinom’
    generateSNPs : <anonymous>: no visible global function definition for
     ‘rbinom’
    minPtest: no visible global function definition for ‘sfIsRunning’
    minPtest: no visible global function definition for ‘sfInit’
    minPtest: no visible global function definition for ‘sfLibrary’
    minPtest: no visible global function definition for ‘sfExport’
    minPtest : p_valfunc: no visible global function definition for
     ‘as.formula’
    minPtest : p_valfunc: no visible global function definition for ‘glm’
    minPtest : p_valfunc: no visible binding for global variable ‘binomial’
    minPtest : perrfunc : <anonymous>: no visible global function
     definition for ‘as.formula’
    minPtest : perrfunc : <anonymous>: no visible global function
     definition for ‘glm’
    minPtest : perrfunc : <anonymous>: no visible binding for global
     variable ‘binomial’
    minPtest : p_valfunc: no visible global function definition for
     ‘pchisq’
    minPtest : perrfunc : <anonymous>: no visible global function
     definition for ‘pchisq’
    minPtest: no visible global function definition for ‘sfClusterApplyLB’
    minPtest: no visible global function definition for ‘mclapply’
    minPtest: no visible global function definition for ‘sfStop’
    minPtest: no visible global function definition for ‘p.adjust’
    plot.minPtest: no visible global function definition for ‘plot’
    plot.minPtest: no visible global function definition for ‘points’
    plot.minPtest: no visible global function definition for ‘axis’
    plot.minPtest: no visible global function definition for ‘box’
    plot.minPtest: no visible global function definition for ‘median’
    plot.minPtest: no visible global function definition for ‘par’
    plot.minPtest: no visible global function definition for ‘lines’
    plot.minPtest: no visible global function definition for ‘mtext’
    Undefined global functions or variables:
     as.formula axis binomial box glm lines mclapply median mtext p.adjust
     par pchisq plot points rbinom sfClusterApplyLB sfExport sfInit
     sfIsRunning sfLibrary sfStop
    Consider adding
     importFrom("graphics", "axis", "box", "lines", "mtext", "par", "plot",
     "points")
     importFrom("stats", "as.formula", "binomial", "glm", "median",
     "p.adjust", "pchisq", "rbinom")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.7
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'vignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `blindtext.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.14 \usepackage
     [bf]{caption2}^^M
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64