CRAN Package Check Results for Package minpack.lm

Last updated on 2015-09-02 11:48:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-8 2.76 9.59 12.35 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-8 2.68 9.61 12.29 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-8 21.10 ERROR
r-devel-linux-x86_64-fedora-gcc 1.1-8 20.21 ERROR
r-devel-osx-x86_64-clang 1.1-8 13.41 ERROR
r-devel-windows-ix86+x86_64 1.1-8 26.00 25.00 51.00 NOTE
r-patched-linux-x86_64 1.1-8 2.82 9.90 12.71 OK
r-patched-solaris-sparc 1.1-8 151.40 OK
r-patched-solaris-x86 1.1-8 40.30 OK
r-release-linux-x86_64 1.1-8 2.82 10.37 13.18 OK
r-release-osx-x86_64-mavericks 1.1-8 OK
r-release-windows-ix86+x86_64 1.1-8 28.00 21.00 49.00 OK
r-oldrel-windows-ix86+x86_64 1.1-8 33.00 23.00 56.00 OK

Check Details

Version: 1.1-8
Check: R code for possible problems
Result: NOTE
    confint.nls.lm: no visible global function definition for ‘coef’
    confint.nls.lm: no visible global function definition for ‘qt’
    confint.nls.lm: no visible global function definition for ‘vcov’
    df.residual.nls.lm: no visible global function definition for ‘resid’
    df.residual.nls.lm: no visible global function definition for ‘coef’
    nlsLM: no visible global function definition for ‘as.formula’
    nlsLM: no visible global function definition for ‘getInitial’
    nlsLM: no visible global function definition for ‘model.weights’
    nlsLM: no visible global function definition for ‘nls.control’
    nlsModel : getPars.noVarying: no visible global function definition for
     ‘setNames’
    nlsModel : getRHS.noVarying: no visible global function definition for
     ‘numericDeriv’
    nlsModel : getPars.varying: no visible global function definition for
     ‘setNames’
    print.summary.nls.lm: no visible global function definition for
     ‘printCoefmat’
    summary.nls.lm: no visible global function definition for ‘coef’
    summary.nls.lm: no visible global function definition for ‘deviance’
    summary.nls.lm: no visible global function definition for ‘pt’
    wfct: no visible global function definition for ‘as.formula’
    wfct: no visible global function definition for ‘na.omit’
    wfct : <anonymous>: no visible global function definition for ‘var’
    wfct: no visible global function definition for ‘residuals’
    Undefined global functions or variables:
     as.formula coef deviance getInitial model.weights na.omit nls.control
     numericDeriv printCoefmat pt qt resid residuals setNames var vcov
    Consider adding
     importFrom("stats", "as.formula", "coef", "deviance", "getInitial",
     "model.weights", "na.omit", "nls.control", "numericDeriv",
     "printCoefmat", "pt", "qt", "resid", "residuals",
     "setNames", "var", "vcov")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1-8
Check: examples
Result: ERROR
    Running examples in ‘minpack.lm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: nlsLM
    > ### Title: Standard 'nls' framework that uses 'nls.lm' for fitting
    > ### Aliases: nlsLM
    > ### Keywords: nonlinear optimize regression
    >
    > ### ** Examples
    >
    > ### Examples from 'nls' doc ###
    > DNase1 <- subset(DNase, Run == 1)
    > ## using a selfStart model
    > fm1DNase1 <- nlsLM(density ~ SSlogis(log(conc), Asym, xmid, scal), DNase1)
    > ## using logistic formula
    > fm2DNase1 <- nlsLM(density ~ Asym/(1 + exp((xmid - log(conc))/scal)),
    + data = DNase1,
    + start = list(Asym = 3, xmid = 0, scal = 1))
    >
    > ## all generics are applicable
    > coef(fm1DNase1)
     Asym xmid scal
    2.345179 1.483089 1.041455
    > confint(fm1DNase1)
    Error in confint.nls(fm1DNase1) : package 'MASS' must be installed
    Calls: confint -> confint.nls
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang