CRAN Package Check Results for Package mixPHM

Last updated on 2014-10-31 08:47:10.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.0 0.78 39.31 40.09 NOTE
r-devel-linux-x86_64-debian-gcc 0.7.0 0.80 38.84 39.64 NOTE
r-devel-linux-x86_64-fedora-clang 0.7.0 82.76 NOTE
r-devel-linux-x86_64-fedora-gcc 0.7.0 77.96 NOTE
r-devel-osx-x86_64-clang 0.7.0 69.11 NOTE
r-devel-windows-ix86+x86_64 0.7.0 3.00 59.00 62.00 NOTE
r-patched-linux-x86_64 0.7.0 0.83 41.89 42.72 NOTE
r-patched-solaris-sparc 0.7.0 480.60 NOTE
r-patched-solaris-x86 0.7.0 98.30 NOTE
r-release-linux-ix86 0.7.0 1.13 51.75 52.88 NOTE
r-release-linux-x86_64 0.7.0 0.80 42.15 42.95 NOTE
r-release-osx-x86_64-mavericks 0.7.0 NOTE
r-release-osx-x86_64-snowleopard 0.7.0 NOTE
r-release-windows-ix86+x86_64 0.7.0 3.00 63.00 66.00 NOTE
r-oldrel-windows-ix86+x86_64 0.7.0 3.00 69.00 72.00 NOTE

Check Details

Version: 0.7.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘COPYRIGHTS’
    Copyright information should be in file inst/COPYRIGHTS
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘lattice’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.7.0
Check: R code for possible problems
Result: NOTE
    Eclass : <anonymous> : <anonymous>: no visible global function
     definition for ‘survreg’
    Eclass: no visible global function definition for ‘survreg’
    Emax : <anonymous> : <anonymous>: no visible global function definition
     for ‘survreg’
    plot.hazard: no visible global function definition for ‘xyplot’
    plot.survival: no visible global function definition for ‘xyplot’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.7.0
Check: Rd line widths
Result: NOTE
    Rd file 'msBIC.Rd':
     \usage lines wider than 90 characters:
     msBIC(x, K, method = "all", Sdist = "weibull", cutpoint = NULL, EMoption = "classification", EMstop = 0.01, maxiter = 100)
    
    Rd file 'plot.hazard.Rd':
     \usage lines wider than 90 characters:
     plot.hazard (x, gr.subset, var.subset, group = TRUE, xlim = NA, ylim = NA, xlab = "Survival Time", ylab = "Hazard Function",
     plot.survival (x, gr.subset, var.subset, group = TRUE, xlim = NA, ylim = NA, xlab = "Survival Time", ylab = "Survival Function",
     main = "Survival Functions", type = "l", lty = 1, lwd = 1, col = NA, legpos = "right", ...)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.7.0
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.hazard':
     ‘plot.hazard’ ‘plot.survival’ ‘plot.profile’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.7.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'lattice' 'survival'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard