CRAN Package Check Results for Package mixPHM

Last updated on 2014-04-23 12:48:22.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.7.0 0.82 43.16 43.99 NOTE
r-devel-linux-x86_64-debian-gcc 0.7.0 0.82 44.52 45.34 NOTE
r-devel-linux-x86_64-fedora-clang 0.7.0 89.09 NOTE
r-devel-linux-x86_64-fedora-gcc 0.7.0 84.73 NOTE
r-devel-osx-x86_64-clang 0.7.0 63.10 NOTE
r-devel-osx-x86_64-gcc 0.7.0 NOTE
r-devel-windows-ix86+x86_64 0.7.0 3.00 61.00 64.00 NOTE
r-patched-linux-x86_64 0.7.0 0.89 42.10 42.99 NOTE
r-patched-solaris-sparc 0.7.0 480.80 NOTE
r-patched-solaris-x86 0.7.0 96.80 NOTE
r-release-linux-ix86 0.7.0 2.00 65.00 67.00 NOTE
r-release-linux-x86_64 0.7.0 0.83 44.72 45.55 NOTE
r-release-osx-x86_64-mavericks 0.7.0 WARN
r-release-osx-x86_64-snowleopard 0.7.0 NOTE
r-release-windows-ix86+x86_64 0.7.0 3.00 63.00 66.00 NOTE
r-oldrel-windows-ix86+x86_64 0.7.0 3.00 66.00 69.00 NOTE

Check Details

Version: 0.7.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘lattice’ ‘survival’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.7.0
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'plot.hazard':
     ‘plot.hazard’ ‘plot.survival’ ‘plot.profile’
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter ‘Writing R documentation files’ in the ‘Writing R
    Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.7.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘COPYRIGHTS’
    Copyright information should be in file inst/COPYRIGHTS
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.7.0
Check: Rd line widths
Result: NOTE
    Rd file 'msBIC.Rd':
     \usage lines wider than 90 characters:
     msBIC(x, K, method = "all", Sdist = "weibull", cutpoint = NULL, EMoption = "classification", EMstop = 0.01, maxiter = 100)
    
    Rd file 'plot.hazard.Rd':
     \usage lines wider than 90 characters:
     plot.hazard (x, gr.subset, var.subset, group = TRUE, xlim = NA, ylim = NA, xlab = "Survival Time", ylab = "Hazard Function",
     plot.survival (x, gr.subset, var.subset, group = TRUE, xlim = NA, ylim = NA, xlab = "Survival Time", ylab = "Survival Function",
     main = "Survival Functions", type = "l", lty = 1, lwd = 1, col = NA, legpos = "right", ...)
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.7.0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    6b9e97e/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 0.7.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'lattice' 'survival'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard