CRAN Package Check Results for Package mixstock

Last updated on 2014-08-22 08:49:12.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.5.1 2.17 32.61 34.78 NOTE
r-devel-linux-x86_64-debian-gcc 0.9.5.1 2.32 32.28 34.60 NOTE
r-devel-linux-x86_64-fedora-clang 0.9.5.1 71.13 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.5.1 66.36 NOTE
r-devel-osx-x86_64-clang 0.9.5.1 62.69 NOTE
r-devel-windows-ix86+x86_64 0.9.5.1 13.00 64.00 77.00 NOTE
r-patched-linux-x86_64 0.9.5.1 2.32 32.19 34.51 NOTE
r-patched-solaris-sparc 0.9.5.1 443.50 NOTE
r-patched-solaris-x86 0.9.5.1 96.80 NOTE
r-release-linux-ix86 0.9.5.1 3.16 44.98 48.14 NOTE
r-release-linux-x86_64 0.9.5.1 2.47 32.91 35.38 NOTE
r-release-osx-x86_64-mavericks 0.9.5.1 NOTE
r-release-osx-x86_64-snowleopard 0.9.5.1 NOTE
r-release-windows-ix86+x86_64 0.9.5.1 10.00 73.00 83.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9.5.1 11.00 73.00 84.00 NOTE

Memtest notes: UBSAN valgrind valgrind

Check Details

Version: 0.9.5.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘coefplot2’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.5.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘abind’ ‘coda’ ‘lattice’ ‘plotrix’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘abind’ ‘coda’ ‘plotrix’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.5.1
Check: files in ‘vignettes’
Result: NOTE
    The following files look like leftovers/mistakes:
     ‘mixstock.bbl’, ‘mixstock.blg’, ‘mixstock.dvi’, ‘nmark.Rd’
    Please remove them from your package.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.5.1
Check: R code for possible problems
Result: NOTE
    as.mcmc.bugs: no visible global function definition for ‘mcmc’
    calc.GR: no visible global function definition for ‘mcmc.list’
    calc.GR: no visible binding for global variable ‘mcmc’
    calc.GR: no visible global function definition for ‘gelman.diag’
    calc.RL.0: no visible global function definition for ‘raftery.diag’
    confint.mixstock.est: no visible global function definition for
     ‘HPDinterval’
    confint.mixstock.est: no visible global function definition for
     ‘as.mcmc’
    expand.bugs.data: no visible global function definition for ‘abind’
    hwdiag.check: no visible global function definition for ‘mcmc’
    hwdiag.check: no visible global function definition for ‘heidel.diag’
    mm.wbugs: no visible global function definition for ‘bugs’
    mm.wbugs: no visible global function definition for ‘jags’
    plot.mixstock.data: no visible global function definition for ‘staxlab’
    plot.mixstock.est : cipanel: no visible global function definition for
     ‘lpoints’
    plot.mixstock.est : cipanel: no visible global function definition for
     ‘larrows’
    plot.mixstock.est: no visible global function definition for ‘bwplot’
    plot.mixstock.est: no visible global function definition for ‘plotCI’
    pm.wbugs: no visible global function definition for ‘bugs’
    tmcmc: no visible global function definition for ‘mcmc.list’
    tmcmc: no visible binding for global variable ‘mcmc’
    tmcmc: no visible global function definition for ‘gelman.diag’
    xyplot.mixstock.est: no visible global function definition for
     ‘as.mcmc.list’
    xyplot.mixstock.est: no visible binding for global variable ‘as.mcmc’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 0.9.5.1
Check: Rd line widths
Result: NOTE
    Rd file 'loglik2.C.Rd':
     \usage lines wider than 90 characters:
     loglik2.C(p, sourcesamp, mixsamp = NULL, verbose = FALSE, transf = c("full", "part", "none"), full = FALSE, cond = FALSE, debug = FALSE ... [TRUNCATED]
    
    Rd file 'uml.Rd':
     \usage lines wider than 90 characters:
     uml.ds(x,grad=uml.grad,start.type="lsolve",fuzz=0,bounds=1e-4,ndepfac=1000,method="L-BFGS-B",debug=FALSE,control=NULL,
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9.5.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: ‘R2jags’ ‘coefplot2’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9.5.1
Check: R code for possible problems
Result: NOTE
    mm.wbugs: no visible global function definition for ‘jags’
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9.5.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: coda
    Loading required package: lattice
    Loading required package: plotrix
    Loading required package: abind
    Warning in plot.mixstock.data(lahanas98, mix.off = 2, leg.space = 0.4) :
     some legend text may be truncated: increase leg.space?
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'mixstock.tex' failed.
    BibTeX errors:
    The top-level auxiliary file: mixstock.aux
    I couldn't open style file chicago.bst
    ---line 19 of file mixstock.aux
     : \bibstyle{chicago
     : }
    I'm skipping whatever remains of this command
    I found no style file---while reading file mixstock.aux
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.9.5.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'abind' 'coda' 'lattice' 'plotrix'
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     'abind' 'coda' 'plotrix'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard