CRAN Package Check Results for Package mixstock

Last updated on 2014-08-01 08:49:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9.5.1 2.12 33.46 35.58 NOTE
r-devel-linux-x86_64-debian-gcc 0.9.5.1 2.53 32.63 35.16 NOTE
r-devel-linux-x86_64-fedora-clang 0.9.5.1 73.54 NOTE
r-devel-linux-x86_64-fedora-gcc 0.9.5.1 69.03 NOTE
r-devel-osx-x86_64-clang 0.9.5.1 66.33 NOTE
r-devel-windows-ix86+x86_64 0.9.5.1 11.00 65.00 76.00 NOTE
r-patched-linux-x86_64 0.9.5.1 2.42 32.31 34.73 NOTE
r-patched-solaris-sparc 0.9.5.1 443.50 NOTE
r-patched-solaris-x86 0.9.5.1 96.50 NOTE
r-release-linux-ix86 0.9.5.1 3.16 44.24 47.39 NOTE
r-release-linux-x86_64 0.9.5.1 2.36 32.68 35.04 NOTE
r-release-osx-x86_64-mavericks 0.9.5.1 NOTE
r-release-osx-x86_64-snowleopard 0.9.5.1 NOTE
r-release-windows-ix86+x86_64 0.9.5.1 13.00 93.00 106.00 NOTE
r-oldrel-windows-ix86+x86_64 0.9.5.1 22.00 95.00 117.00 NOTE

Memtest notes: ASAN UBSAN valgrind valgrind

Check Details

Version: 0.9.5.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: coefplot2
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.5.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     abind coda lattice plotrix
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     abind coda plotrix
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.5.1
Check: files in vignettes
Result: NOTE
    The following files look like leftovers/mistakes:
     mixstock.bbl , mixstock.blg , mixstock.dvi , nmark.Rd
    Please remove them from your package.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.9.5.1
Check: Rd line widths
Result: NOTE
    Rd file 'loglik2.C.Rd':
     \usage lines wider than 90 characters:
     loglik2.C(p, sourcesamp, mixsamp = NULL, verbose = FALSE, transf = c("full", "part", "none"), full = FALSE, cond = FALSE, debug = FALSE ... [TRUNCATED]
    
    Rd file 'uml.Rd':
     \usage lines wider than 90 characters:
     uml.ds(x,grad=uml.grad,start.type="lsolve",fuzz=0,bounds=1e-4,ndepfac=1000,method="L-BFGS-B",debug=FALSE,control=NULL,
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9.5.1
Check: files in 'vignettes'
Result: NOTE
    The following files look like leftovers/mistakes:
     'mixstock.bbl', 'mixstock.blg', 'mixstock.dvi', 'nmark.Rd'
    Please remove them from your package.
    * checking examples ...
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9.5.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: R2jags coefplot2
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9.5.1
Check: R code for possible problems
Result: NOTE
    mm.wbugs: no visible global function definition for jags
Flavor: r-release-osx-x86_64-mavericks

Version: 0.9.5.1
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: coda
    Loading required package: lattice
    Loading required package: plotrix
    Loading required package: abind
    Warning in plot.mixstock.data(lahanas98, mix.off = 2, leg.space = 0.4) :
     some legend text may be truncated: increase leg.space?
    Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'mixstock.tex' failed.
    BibTeX errors:
    The top-level auxiliary file: mixstock.aux
    I couldn't open style file chicago.bst
    ---line 19 of file mixstock.aux
     : \bibstyle{chicago
     : }
    I'm skipping whatever remains of this command
    I found no style file---while reading file mixstock.aux
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 0.9.5.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     'abind' 'coda' 'lattice' 'plotrix'
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     'abind' 'coda' 'plotrix'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard