CRAN Package Check Results for Package mizer

Last updated on 2017-08-21 09:48:04.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2 2.03 286.24 288.27 NOTE
r-devel-linux-x86_64-debian-gcc 0.2 1.92 291.85 293.76 NOTE
r-devel-linux-x86_64-fedora-clang 0.2 538.75 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2 556.46 NOTE
r-devel-windows-ix86+x86_64 0.2 5.00 140.00 145.00 NOTE --no-vignettes
r-patched-linux-x86_64 0.2 1.95 282.66 284.61 NOTE
r-patched-solaris-x86 0.2 866.60 NOTE
r-release-linux-x86_64 0.2 2.05 279.58 281.64 NOTE
r-release-windows-ix86+x86_64 0.2 10.00 186.00 196.00 NOTE --no-vignettes
r-release-osx-x86_64 0.2 NOTE
r-oldrel-windows-ix86+x86_64 0.2 7.00 45.00 52.00 NOTE --no-vignettes
r-oldrel-osx-x86_64 0.2 NOTE

Check Details

Version: 0.2
Check: R code for possible problems
Result: NOTE
    getFMort,MizerSim-missing: warning in get_time_elements(object,
     time_range, slot = "effort"): partial argument match of ‘slot’ to
     ‘slot_name’
    getFMortGear,MizerSim-missing: warning in get_time_elements(object,
     time_range, slot = "effort"): partial argument match of ‘slot’ to
     ‘slot_name’
    plotFMort,MizerSim: warning in scale_y_continuous(name = "Total fishing
     mortality", lim = c(0, max(plot_dat$value))): partial argument match
     of ‘lim’ to ‘limits’
    plotFeedingLevel,MizerSim: warning in scale_y_continuous(name =
     "Feeding Level", lim = c(0, 1)): partial argument match of ‘lim’ to
     ‘limits’
    plotM2,MizerSim: warning in scale_y_continuous(name = "M2", lim = c(0,
     max(plot_dat$value))): partial argument match of ‘lim’ to ‘limits’
    MizerParams,data.frame-matrix: no visible global function definition
     for ‘combn’
    getCommunitySlope,MizerSim : <anonymous>: no visible global function
     definition for ‘lm’
    plotBiomass,MizerSim: no visible binding for global variable ‘time’
    plotBiomass,MizerSim: no visible binding for global variable ‘value’
    plotBiomass,MizerSim: no visible binding for global variable ‘Species’
    plotFMort,MizerSim: no visible binding for global variable ‘w’
    plotFMort,MizerSim: no visible binding for global variable ‘value’
    plotFMort,MizerSim: no visible binding for global variable ‘Species’
    plotFeedingLevel,MizerSim: no visible binding for global variable ‘w’
    plotFeedingLevel,MizerSim: no visible binding for global variable
     ‘value’
    plotFeedingLevel,MizerSim: no visible binding for global variable
     ‘Species’
    plotM2,MizerSim: no visible binding for global variable ‘w’
    plotM2,MizerSim: no visible binding for global variable ‘value’
    plotM2,MizerSim: no visible binding for global variable ‘Species’
    plotSpectra,MizerSim: no visible binding for global variable ‘w’
    plotSpectra,MizerSim: no visible binding for global variable ‘value’
    plotSpectra,MizerSim: no visible binding for global variable ‘Species’
    plotYield,MizerSim: no visible binding for global variable ‘time’
    plotYield,MizerSim: no visible binding for global variable ‘value’
    plotYield,MizerSim: no visible binding for global variable ‘Species’
    plotYieldGear,MizerSim: no visible binding for global variable ‘time’
    plotYieldGear,MizerSim: no visible binding for global variable ‘value’
    plotYieldGear,MizerSim: no visible binding for global variable
     ‘Species’
    plotYieldGear,MizerSim: no visible binding for global variable ‘gear’
    Undefined global functions or variables:
     Species combn gear lm time value w
    Consider adding
     importFrom("stats", "lm", "time")
     importFrom("utils", "combn")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 0.2
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
    getFMort,MizerSim-missing: warning in get_time_elements(object,
     time_range, slot = "effort"): partial argument match of 'slot' to
     'slot_name'
    getFMortGear,MizerSim-missing: warning in get_time_elements(object,
     time_range, slot = "effort"): partial argument match of 'slot' to
     'slot_name'
    plotFMort,MizerSim: warning in scale_y_continuous(name = "Total fishing
     mortality", lim = c(0, max(plot_dat$value))): partial argument match
     of 'lim' to 'limits'
    plotFeedingLevel,MizerSim: warning in scale_y_continuous(name =
     "Feeding Level", lim = c(0, 1)): partial argument match of 'lim' to
     'limits'
    plotM2,MizerSim: warning in scale_y_continuous(name = "M2", lim = c(0,
     max(plot_dat$value))): partial argument match of 'lim' to 'limits'
    MizerParams,data.frame-matrix: no visible global function definition
     for 'combn'
    getCommunitySlope,MizerSim : <anonymous>: no visible global function
     definition for 'lm'
    plotBiomass,MizerSim: no visible binding for global variable 'time'
    plotBiomass,MizerSim: no visible binding for global variable 'value'
    plotBiomass,MizerSim: no visible binding for global variable 'Species'
    plotFMort,MizerSim: no visible binding for global variable 'w'
    plotFMort,MizerSim: no visible binding for global variable 'value'
    plotFMort,MizerSim: no visible binding for global variable 'Species'
    plotFeedingLevel,MizerSim: no visible binding for global variable 'w'
    plotFeedingLevel,MizerSim: no visible binding for global variable
     'value'
    plotFeedingLevel,MizerSim: no visible binding for global variable
     'Species'
    plotM2,MizerSim: no visible binding for global variable 'w'
    plotM2,MizerSim: no visible binding for global variable 'value'
    plotM2,MizerSim: no visible binding for global variable 'Species'
    plotSpectra,MizerSim: no visible binding for global variable 'w'
    plotSpectra,MizerSim: no visible binding for global variable 'value'
    plotSpectra,MizerSim: no visible binding for global variable 'Species'
    plotYield,MizerSim: no visible binding for global variable 'time'
    plotYield,MizerSim: no visible binding for global variable 'value'
    plotYield,MizerSim: no visible binding for global variable 'Species'
    plotYieldGear,MizerSim: no visible binding for global variable 'time'
    plotYieldGear,MizerSim: no visible binding for global variable 'value'
    plotYieldGear,MizerSim: no visible binding for global variable
     'Species'
    plotYieldGear,MizerSim: no visible binding for global variable 'gear'
    Undefined global functions or variables:
     Species combn gear lm time value w
    Consider adding
     importFrom("stats", "lm", "time")
     importFrom("utils", "combn")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in xy.coords(x, y, xlabel, ylabel, log) :
     1 y value <= 0 omitted from logarithmic plot
    species, w\\_inf, w\\_mat, beta, sigma, r\\_max, k\\_vbError in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, :
     Running 'texi2dvi' on 'mizer_vignette.tex' failed.
    LaTeX errors:
    ! LaTeX Error: File `authblk.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    ! Emergency stop.
    <read *>
    
    l.45 \numberwithin
     {equation}{section} % Equation numbers relative to section...
    ! ==> Fatal error occurred, no output PDF file produced!
    Calls: buildVignettes -> texi2pdf -> texi2dvi
    Execution halted
Flavor: r-release-osx-x86_64