CRAN Package Check Results for Package mlDNA

Last updated on 2015-01-27 11:49:55.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 6.36 61.23 67.59 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 6.51 57.57 64.08 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 200.70 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 196.04 NOTE
r-devel-osx-x86_64-clang 1.1 167.75 NOTE
r-devel-windows-ix86+x86_64 1.1 17.00 90.00 107.00 NOTE
r-patched-linux-x86_64 1.1 7.61 82.20 89.81 NOTE
r-patched-solaris-sparc 1.1 1057.10 NOTE
r-patched-solaris-x86 1.1 270.40 NOTE
r-release-linux-ix86 1.1 8.82 98.12 106.94 NOTE
r-release-linux-x86_64 1.1 7.43 82.19 89.62 NOTE
r-release-osx-x86_64-mavericks 1.1 ERROR
r-release-osx-x86_64-snowleopard 1.1 OK
r-release-windows-ix86+x86_64 1.1 33.00 147.00 180.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1 42.00 220.00 262.00 NOTE

Check Details

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘cairoDevice’ ‘gplots’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    .DNA.connectivitylist : .fun_conn_idx: no visible global function
     definition for ‘attach.big.matrix’
    .DNA.distance: no visible global function definition for
     ‘as.big.matrix’
    .checkadjmatrix: no visible global function definition for
     ‘is.big.matrix’
    .filterLowCorrelation: no visible global function definition for
     ‘is.big.matrix’
    .network.differences : .fun_distance: no visible global function
     definition for ‘attach.big.matrix’
    .uniqueTissues: no visible global function definition for ‘str_sub’
    geneRanker: no visible global function definition for ‘RankingTstat’
    geneRanker: no visible global function definition for ‘RankingFC’
    geneRanker: no visible global function definition for ‘RankingWilcoxon’
    geneRanker: no visible global function definition for
     ‘RankingBaldiLong’
    geneRanker: no visible global function definition for
     ‘RankingShrinkageT’
    geneRanker: no visible global function definition for ‘RankingSam’
    geneRanker: no visible global function definition for
     ‘RankingSoftthresholdT’
    geneRanker: no visible global function definition for ‘RankingLimma’
    geneRanker: no visible global function definition for ‘toplist’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘bigmemory’
Flavors: r-patched-solaris-sparc, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘rsgcc’
    
    Packages suggested but not available for checking:
     ‘GeneSelector’ ‘cairoDevice’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1
Check: R code for possible problems
Result: NOTE
    .DNA.connectivitylist : .fun_conn_idx: no visible global function
     definition for 'attach.big.matrix'
    .DNA.distance: no visible global function definition for
     'as.big.matrix'
    .checkadjmatrix: no visible global function definition for
     'is.big.matrix'
    .filterLowCorrelation: no visible global function definition for
     'is.big.matrix'
    .network.differences : .fun_distance: no visible global function
     definition for 'attach.big.matrix'
Flavor: r-oldrel-windows-ix86+x86_64