CRAN Package Check Results for Package mlDNA

Last updated on 2015-08-31 04:48:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 5.04 50.33 55.37 NOTE
r-devel-linux-x86_64-debian-gcc 1.1 4.83 48.42 53.25 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 110.54 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 107.38 NOTE
r-devel-osx-x86_64-clang 1.1 75.19 NOTE
r-devel-windows-ix86+x86_64 1.1 20.00 87.00 107.00 NOTE
r-patched-linux-x86_64 1.1 5.65 53.93 59.58 NOTE
r-patched-solaris-sparc 1.1 761.90 NOTE
r-patched-solaris-x86 1.1 199.90 NOTE
r-release-linux-x86_64 1.1 6.27 55.26 61.53 NOTE
r-release-osx-x86_64-mavericks 1.1 NOTE
r-release-windows-ix86+x86_64 1.1 27.00 153.00 180.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1 45.00 230.00 275.00 NOTE

Check Details

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘cairoDevice’ ‘gplots’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    .DNA.connectivitylist : .fun_conn_idx: no visible global function
     definition for ‘attach.big.matrix’
    .DNA.distance: no visible global function definition for
     ‘as.big.matrix’
    .checkadjmatrix: no visible global function definition for
     ‘is.big.matrix’
    .cor.threshold: no visible global function definition for ‘qt’
    .cv: no visible global function definition for ‘sd’
    .filterLowCorrelation: no visible global function definition for
     ‘is.big.matrix’
    .network.differences : .fun_distance: no visible global function
     definition for ‘attach.big.matrix’
    .plotLines: no visible global function definition for ‘lines’
    .plotLines: no visible global function definition for ‘legend’
    .uniqueTissues: no visible binding for global variable ‘tail’
    .uniqueTissues: no visible global function definition for ‘str_sub’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘write.table’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘install.packages’
    PSOL_NegativeExpansion: no visible global function definition for ‘pdf’
    PSOL_NegativeExpansion: no visible global function definition for ‘par’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘points’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘axis’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘mtext’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘dev.off’
    PSOL_ResultExtraction: no visible global function definition for
     ‘read.table’
    geneRanker: no visible global function definition for ‘RankingTstat’
    geneRanker: no visible global function definition for ‘RankingFC’
    geneRanker: no visible global function definition for ‘RankingWilcoxon’
    geneRanker: no visible global function definition for
     ‘RankingBaldiLong’
    geneRanker: no visible global function definition for
     ‘RankingShrinkageT’
    geneRanker: no visible global function definition for ‘RankingSam’
    geneRanker: no visible global function definition for
     ‘RankingSoftthresholdT’
    geneRanker: no visible global function definition for ‘RankingLimma’
    geneRanker: no visible global function definition for ‘toplist’
    optimalScore: no visible global function definition for ‘abline’
    plotROC: no visible global function definition for ‘par’
    predictor: no visible global function definition for ‘predict’
    Undefined global functions or variables:
     RankingBaldiLong RankingFC RankingLimma RankingSam RankingShrinkageT
     RankingSoftthresholdT RankingTstat RankingWilcoxon abline
     as.big.matrix attach.big.matrix axis dev.off install.packages
     is.big.matrix legend lines mtext par pdf points predict qt read.table
     sd str_sub tail toplist write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "abline", "axis", "legend", "lines", "mtext",
     "par", "points")
     importFrom("stats", "predict", "qt", "sd")
     importFrom("utils", "install.packages", "read.table", "tail",
     "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    .DNA.connectivitylist : .fun_conn_idx: no visible global function
     definition for ‘attach.big.matrix’
    .DNA.distance: no visible global function definition for
     ‘as.big.matrix’
    .checkadjmatrix: no visible global function definition for
     ‘is.big.matrix’
    .filterLowCorrelation: no visible global function definition for
     ‘is.big.matrix’
    .network.differences : .fun_distance: no visible global function
     definition for ‘attach.big.matrix’
    .uniqueTissues: no visible global function definition for ‘str_sub’
    geneRanker: no visible global function definition for ‘RankingTstat’
    geneRanker: no visible global function definition for ‘RankingFC’
    geneRanker: no visible global function definition for ‘RankingWilcoxon’
    geneRanker: no visible global function definition for
     ‘RankingBaldiLong’
    geneRanker: no visible global function definition for
     ‘RankingShrinkageT’
    geneRanker: no visible global function definition for ‘RankingSam’
    geneRanker: no visible global function definition for
     ‘RankingSoftthresholdT’
    geneRanker: no visible global function definition for ‘RankingLimma’
    geneRanker: no visible global function definition for ‘toplist’
    Undefined global functions or variables:
     RankingBaldiLong RankingFC RankingLimma RankingSam RankingShrinkageT
     RankingSoftthresholdT RankingTstat RankingWilcoxon as.big.matrix
     attach.big.matrix is.big.matrix str_sub toplist
Flavor: r-devel-osx-x86_64-clang

Version: 1.1
Check: R code for possible problems
Result: NOTE
    .DNA.connectivitylist : .fun_conn_idx: no visible global function
     definition for ‘attach.big.matrix’
    .DNA.distance: no visible global function definition for
     ‘as.big.matrix’
    .checkadjmatrix: no visible global function definition for
     ‘is.big.matrix’
    .filterLowCorrelation: no visible global function definition for
     ‘is.big.matrix’
    .network.differences : .fun_distance: no visible global function
     definition for ‘attach.big.matrix’
    .uniqueTissues: no visible global function definition for ‘str_sub’
    geneRanker: no visible global function definition for ‘RankingTstat’
    geneRanker: no visible global function definition for ‘RankingFC’
    geneRanker: no visible global function definition for ‘RankingWilcoxon’
    geneRanker: no visible global function definition for
     ‘RankingBaldiLong’
    geneRanker: no visible global function definition for
     ‘RankingShrinkageT’
    geneRanker: no visible global function definition for ‘RankingSam’
    geneRanker: no visible global function definition for
     ‘RankingSoftthresholdT’
    geneRanker: no visible global function definition for ‘RankingLimma’
    geneRanker: no visible global function definition for ‘toplist’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘GeneSelector’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'bigmemory'
Flavor: r-oldrel-windows-ix86+x86_64