CRAN Package Check Results for Package mlDNA

Last updated on 2016-04-30 03:51:17.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.1 5.11 49.22 54.33 NOTE
r-devel-linux-x86_64-fedora-clang 1.1 103.76 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1 99.19 NOTE
r-devel-osx-x86_64-clang 1.1 111.62 NOTE
r-devel-windows-ix86+x86_64 1.1 15.00 92.00 107.00 NOTE
r-patched-linux-x86_64 1.1 4.70 48.24 52.94 NOTE
r-patched-solaris-sparc 1.1 609.60 NOTE
r-patched-solaris-x86 1.1 147.40 NOTE
r-release-linux-x86_64 1.1 5.57 56.64 62.21 NOTE
r-release-osx-x86_64-mavericks 1.1 NOTE
r-release-windows-ix86+x86_64 1.1 19.00 90.00 109.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1 47.00 227.00 274.00 NOTE

Check Details

Version: 1.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls in package code:
     ‘cairoDevice’ ‘gplots’
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: R code for possible problems
Result: NOTE
    .DNA.connectivitylist : .fun_conn_idx: no visible global function
     definition for ‘attach.big.matrix’
    .DNA.distance: no visible global function definition for
     ‘as.big.matrix’
    .checkadjmatrix: no visible global function definition for
     ‘is.big.matrix’
    .cor.threshold: no visible global function definition for ‘qt’
    .cv: no visible global function definition for ‘sd’
    .filterLowCorrelation: no visible global function definition for
     ‘is.big.matrix’
    .network.differences : .fun_distance: no visible global function
     definition for ‘attach.big.matrix’
    .plotLines: no visible global function definition for ‘lines’
    .plotLines: no visible global function definition for ‘legend’
    .uniqueTissues: no visible binding for global variable ‘tail’
    .uniqueTissues: no visible global function definition for ‘str_sub’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘write.table’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘install.packages’
    PSOL_NegativeExpansion: no visible global function definition for ‘pdf’
    PSOL_NegativeExpansion: no visible global function definition for ‘par’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘points’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘axis’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘mtext’
    PSOL_NegativeExpansion: no visible global function definition for
     ‘dev.off’
    PSOL_ResultExtraction: no visible global function definition for
     ‘read.table’
    geneRanker: no visible global function definition for ‘RankingTstat’
    geneRanker: no visible global function definition for ‘RankingFC’
    geneRanker: no visible global function definition for ‘RankingWilcoxon’
    geneRanker: no visible global function definition for
     ‘RankingBaldiLong’
    geneRanker: no visible global function definition for
     ‘RankingShrinkageT’
    geneRanker: no visible global function definition for ‘RankingSam’
    geneRanker: no visible global function definition for
     ‘RankingSoftthresholdT’
    geneRanker: no visible global function definition for ‘RankingLimma’
    geneRanker: no visible global function definition for ‘toplist’
    optimalScore: no visible global function definition for ‘abline’
    plotROC: no visible global function definition for ‘par’
    predictor: no visible global function definition for ‘predict’
    Undefined global functions or variables:
     RankingBaldiLong RankingFC RankingLimma RankingSam RankingShrinkageT
     RankingSoftthresholdT RankingTstat RankingWilcoxon abline
     as.big.matrix attach.big.matrix axis dev.off install.packages
     is.big.matrix legend lines mtext par pdf points predict qt read.table
     sd str_sub tail toplist write.table
    Consider adding
     importFrom("grDevices", "dev.off", "pdf")
     importFrom("graphics", "abline", "axis", "legend", "lines", "mtext",
     "par", "points")
     importFrom("stats", "predict", "qt", "sd")
     importFrom("utils", "install.packages", "read.table", "tail",
     "write.table")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 1.1
Check: R code for possible problems
Result: NOTE
    .DNA.connectivitylist : .fun_conn_idx: no visible global function
     definition for ‘attach.big.matrix’
    .DNA.distance: no visible global function definition for
     ‘as.big.matrix’
    .checkadjmatrix: no visible global function definition for
     ‘is.big.matrix’
    .filterLowCorrelation: no visible global function definition for
     ‘is.big.matrix’
    .network.differences : .fun_distance: no visible global function
     definition for ‘attach.big.matrix’
    .uniqueTissues: no visible global function definition for ‘str_sub’
    geneRanker: no visible global function definition for ‘RankingTstat’
    geneRanker: no visible global function definition for ‘RankingFC’
    geneRanker: no visible global function definition for ‘RankingWilcoxon’
    geneRanker: no visible global function definition for
     ‘RankingBaldiLong’
    geneRanker: no visible global function definition for
     ‘RankingShrinkageT’
    geneRanker: no visible global function definition for ‘RankingSam’
    geneRanker: no visible global function definition for
     ‘RankingSoftthresholdT’
    geneRanker: no visible global function definition for ‘RankingLimma’
    geneRanker: no visible global function definition for ‘toplist’
Flavors: r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘GeneSelector’
Flavor: r-release-osx-x86_64-mavericks