CRAN Package Check Results for Package mlgt

Last updated on 2014-08-20 17:47:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.16 1.08 15.27 16.35 NOTE
r-devel-linux-x86_64-debian-gcc 0.16 1.06 15.09 16.15 NOTE
r-devel-linux-x86_64-fedora-clang 0.16 35.64 NOTE
r-devel-linux-x86_64-fedora-gcc 0.16 35.05 NOTE
r-devel-osx-x86_64-clang 0.16 31.94 NOTE
r-devel-windows-ix86+x86_64 0.16 3.00 26.00 29.00 NOTE
r-patched-linux-x86_64 0.16 0.99 15.22 16.20 NOTE
r-patched-solaris-sparc 0.16 200.30 NOTE
r-patched-solaris-x86 0.16 48.20 NOTE
r-release-linux-ix86 0.16 1.47 23.23 24.70 NOTE
r-release-linux-x86_64 0.16 1.03 16.18 17.21 NOTE
r-release-osx-x86_64-mavericks 0.16 NOTE
r-release-osx-x86_64-snowleopard 0.16 NOTE
r-release-windows-ix86+x86_64 0.16 3.00 27.00 30.00 NOTE
r-oldrel-windows-ix86+x86_64 0.16 4.00 28.00 32.00 NOTE

Check Details

Version: 0.16
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘methods’ ‘seqinr’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.16
Check: R code for possible problems
Result: NOTE
    createKnownAlleleList: no visible binding for global variable ‘name’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.16
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘CHANGELOG.txt’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.16
Check: R code for possible problems
Result: NOTE
    alignReport: no visible global function definition for ‘as.alignment’
    alignReport: no visible global function definition for ‘consensus’
    alignReport: no visible global function definition for ‘con’
    createKnownAlleleList: no visible global function definition for
     ‘read.alignment’
    createKnownAlleleList: no visible global function definition for
     ‘write.fasta’
    createKnownAlleleList: no visible global function definition for
     ‘read.fasta’
    createKnownAlleleList: no visible global function definition for ‘s2c’
    createKnownAlleleList: no visible binding for global variable ‘name’
    createKnownAlleleList: no visible global function definition for
     ‘as.SeqFastadna’
    dumpVariantMap.mlgtResult: no visible global function definition for
     ‘write.fasta’
    dumpVariantMap.mlgtResult: no visible binding for global variable ‘s2c’
    dumpVariants: no visible global function definition for ‘as.alignment’
    dumpVariants: no visible global function definition for ‘write.fasta’
    dumpVariants: no visible binding for global variable ‘s2c’
    errorCorrect.alignment: no visible global function definition for
     ‘consensus’
    errorCorrect.alignment: no visible global function definition for ‘con’
    errorCorrect.alignment: no visible global function definition for
     ‘as.matrix.alignment’
    errorCorrect.alignment: no visible binding for global variable ‘c2s’
    errorCorrect.alignment: no visible global function definition for
     ‘as.alignment’
    errorCorrect.mlgtResult: no visible global function definition for
     ‘getSequence’
    errorCorrect.mlgtResult: no visible global function definition for
     ‘as.alignment’
    errorCorrect.mlgtResult: no visible global function definition for
     ‘as.SeqFastadna’
    getSubSeqsTable: no visible global function definition for ‘read.fasta’
    getSubSeqsTable: no visible global function definition for
     ‘write.fasta’
    getSubSeqsTable: no visible global function definition for
     ‘as.alignment’
    getSubSeqsTable: no visible global function definition for ‘s2c’
    makeVarAlleleBlastMap: no visible global function definition for
     ‘getName’
    makeVarAlleleBlastMap: no visible global function definition for
     ‘write.fasta’
    mlgt.mlgtDesign: no visible global function definition for
     ‘getSequence’
    mlgt.mlgtDesign: no visible global function definition for
     ‘as.SeqFastadna’
    prepareMlgtRun.mlgtDesign: no visible global function definition for
     ‘write.fasta’
    stripGapColumns: no visible global function definition for ‘con’
    stripGapColumns: no visible binding for global variable ‘c2s’
    stripGapColumns: no visible global function definition for
     ‘as.alignment’
    mlgt,mlgtDesign: no visible global function definition for
     ‘getSequence’
    mlgt,mlgtDesign: no visible global function definition for
     ‘as.SeqFastadna’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang