CRAN Package Check Results for Package mra

Last updated on 2014-09-17 11:47:23.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.13 3.90 16.37 20.27 NOTE
r-devel-linux-x86_64-debian-gcc 2.13 3.68 15.94 19.62 NOTE
r-devel-linux-x86_64-fedora-clang 2.13 37.78 NOTE
r-devel-linux-x86_64-fedora-gcc 2.13 35.82 NOTE
r-devel-osx-x86_64-clang 2.13 36.45 NOTE
r-devel-windows-ix86+x86_64 2.13 14.00 34.00 48.00 NOTE
r-patched-linux-x86_64 2.13 3.88 16.87 20.76 NOTE
r-patched-solaris-sparc 2.13 243.90 NOTE
r-patched-solaris-x86 2.13 54.30 NOTE
r-release-linux-ix86 2.13 5.41 24.28 29.68 NOTE
r-release-linux-x86_64 2.13 4.07 17.29 21.36 NOTE
r-release-osx-x86_64-mavericks 2.13 WARN
r-release-windows-ix86+x86_64 2.13 18.00 35.00 53.00 NOTE
r-oldrel-windows-ix86+x86_64 2.13 13.00 36.00 49.00 NOTE

Check Details

Version: 2.13
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘desktop.ini’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64

Version: 2.13
Check: Rd line widths
Result: NOTE
    Rd file 'F.cjs.estim.Rd':
     \usage lines wider than 90 characters:
     c.hat = -1, df = NA, intervals=rep(1,ncol(histories)-1), conf=0.95, link="logit", control=mra.control())
     \examples lines wider than 100 characters:
     for(j in 1:ncol(dipper.histories)){ assign(paste("x",j,sep=""), xy$x[,,j]) } # Extract 2-D matrices of 0s and 1s
    
    Rd file 'F.cjs.simulate.Rd':
     \usage lines wider than 90 characters:
     F.cjs.simulate(super.p, super.s, fit, N1 = 1000, births.per.indiv = "constant.popln", R = 100)
     \examples lines wider than 100 characters:
     sim.list <- F.cjs.simulate( rep(0.3,ns), rep(0.9,ns-1), N1=N, R=100 ) # should do at least R = 500, but takes a while...
     plot( 1:10, colMeans(results, na.rm=TRUE), xlab="Occasion", ylab="Mean population estimate", col="red", type="b")
     plot( 1:length(mean.N), mean.N, ylim=range(c(mean.N,N),na.rm=TRUE), xlab="Occasion", ylab="Mean population estimate", col="red", type=" ... [TRUNCATED]
     fit <- F.cjs.estim( ~tvar(ct,nan=nrow(x$hists),drop=c(1,2)), ~tvar(ct,nan=nrow(x$hists),drop=c(1,6,7)),
     plot( 1:length(mean.N), mean.N, ylim=range(c(mean.N,N),na.rm=TRUE), xlab="Occasion", ylab="Mean population estimate", col="red", type=" ... [TRUNCATED]
    
    Rd file 'F.cr.model.avg.Rd':
     \examples lines wider than 100 characters:
     dipper.02 <- F.cjs.estim( ~tvar(ct,drop=c(1,2)), ~tvar(cT, nan=nrow(dipper.histories)), dipper.histories )
    
    Rd file 'F.fit.table.Rd':
     \examples lines wider than 100 characters:
     dipr.02 <- F.cjs.estim( ~tvar(ct,drop=c(1,2)), ~tvar(cT, nan=nrow(dipper.histories)), dipper.histories )
    
    Rd file 'F.step.cjs.Rd':
     \usage lines wider than 90 characters:
     F.step.cjs(cap.covars, surv.covars, fit.crit = "qaicc", signif.drop = 0, signif.increase = 0, plot = TRUE, ...)
     \examples lines wider than 100 characters:
     final.fit <- F.step.cjs( cap.vars, surv.vars, histories=ch, control=mra.control(maxfn=500, cov.meth=2) )
    
    Rd file 'lines.cjs.Rd':
     \examples lines wider than 100 characters:
     dipper.cjs <- F.cjs.estim( ~1, ~x2+x3, dipper.histories ) # constant capture probability, period (i.e., flood) effects on survival
    
    Rd file 'mra.control.Rd':
     \examples lines wider than 100 characters:
     dipper.cjs <- F.cjs.estim( ~tvar(ct,drop=c(1,2)), ~tvar(ct,drop=c(1,6,7)), dipper.histories, control=mra.control(trace=1, maxfn=200) )
    
    Rd file 'predict.cjs.Rd':
     \examples lines wider than 100 characters:
     for(j in 1:ncol(dipper.histories)){ assign(paste("x",j,sep=""), xy$x[,,j]) } # Extract 2-D matricies of 0s and 1s
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-linux-x86_64

Version: 2.13
Check: compiled code
Result: NOTE
    File ‘mra/libs/mra.so’:
     Found ‘_gfortran_st_write’, possibly from ‘write’ (Fortran), ‘print’
     (Fortran)
     Object: ‘Mrawin.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.13
Check: compiled code
Result: NOTE
    File ‘mra/libs/mra.so’:
     Found ‘__gfortran_st_write’, possibly from ‘write’ (Fortran), ‘print’
     (Fortran)
     Object: ‘Mrawin.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-clang

Version: 2.13
Check: compiled code
Result: NOTE
    File 'mra/libs/i386/mra.dll':
     Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
     (Fortran)
     Object: 'Mrawin.o'
    File 'mra/libs/x64/mra.dll':
     Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
     (Fortran)
     Object: 'Mrawin.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console, nor the C RNG.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-devel-windows-ix86+x86_64

Version: 2.13
Check: compiled code
Result: NOTE
    File ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/mra/libs/mra.so’:
     Found ‘_gfortran_st_write’, possibly from ‘write’ (Fortran), ‘print’
     (Fortran)
     Object: ‘Mrawin.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-patched-linux-x86_64

Version: 2.13
Check: compiled code
Result: NOTE
    File ‘/home/ripley/R/Lib32/mra/libs/mra.so’:
     Found ‘__f90_esfw’, possibly from ‘print’ (Fortran), ‘write’
     (Fortran)
     Object: ‘Mrawin.o’
     Found ‘__f90_eslw’, possibly from ‘print’ (Fortran), ‘write’
     (Fortran)
     Object: ‘Mrawin.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-patched-solaris-sparc, r-patched-solaris-x86

Version: 2.13
Check: compiled code
Result: NOTE
    File ‘/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/mra/libs/mra.so’:
     Found ‘_gfortran_st_write’, possibly from ‘write’ (Fortran), ‘print’
     (Fortran)
     Object: ‘Mrawin.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-release-linux-ix86, r-release-linux-x86_64

Version: 2.13
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: Pointer at (1) in pointer assignment might outlive the pointer target
     Warning: Pointer at (1) in pointer assignment might outlive the pointer target
     Warning: Pointer at (1) in pointer assignment might outlive the pointer target
     Warning: Pointer at (1) in pointer assignment might outlive the pointer target
     Warning: Possible change of value in conversion from REAL(4) to INTEGER(4) at (1)
     Warning: Pointer at (1) in pointer assignment might outlive the pointer target
     Warning: Pointer at (1) in pointer assignment might outlive the pointer target
Flavor: r-release-osx-x86_64-mavericks

Version: 2.13
Check: compiled code
Result: NOTE
    File ‘/Builds/CRAN-QA-Simon/packages/mavericks-x86_64/results/3.1/mra.Rcheck/mra/libs/mra.so’:
     Found ‘__gfortran_st_write’, possibly from ‘write’ (Fortran), ‘print’
     (Fortran)
     Object: ‘Mrawin.o’
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 2.13
Check: compiled code
Result: NOTE
    File 'd:/Rcompile/CRANpkg/lib/3.1/mra/libs/i386/mra.dll':
     Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
     (Fortran)
     Object: 'Mrawin.o'
    File 'd:/Rcompile/CRANpkg/lib/3.1/mra/libs/x64/mra.dll':
     Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
     (Fortran)
     Object: 'Mrawin.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-release-windows-ix86+x86_64

Version: 2.13
Check: compiled code
Result: NOTE
    File 'd:/Rcompile/CRANpkg/lib/3.0/mra/libs/i386/mra.dll':
     Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
     (Fortran)
     Object: 'Mrawin.o'
    File 'd:/Rcompile/CRANpkg/lib/3.0/mra/libs/x64/mra.dll':
     Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
     (Fortran)
     Object: 'Mrawin.o'
    
    Compiled code should not call entry points which might terminate R nor
    write to stdout/stderr instead of to the console.
    
    See 'Writing portable packages' in the 'Writing R Extensions' manual.
Flavor: r-oldrel-windows-ix86+x86_64