CRAN Package Check Results for Package msarc

Last updated on 2015-04-18 13:48:52.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.5 2.04 40.08 42.13 OK
r-devel-linux-x86_64-debian-gcc 1.4.5 1.82 40.27 42.09 OK
r-devel-linux-x86_64-fedora-clang 1.4.5 87.53 OK
r-devel-linux-x86_64-fedora-gcc 1.4.5 82.87 OK
r-devel-osx-x86_64-clang 1.4.5 83.36 OK
r-patched-linux-x86_64 1.4.5 2.13 38.74 40.88 OK
r-patched-solaris-sparc 1.4.5 544.20 OK
r-patched-solaris-x86 1.4.5 126.90 OK
r-release-linux-x86_64 1.4.5 1.82 39.14 40.96 OK
r-release-osx-x86_64-mavericks 1.4.5 ERROR
r-release-osx-x86_64-snowleopard 1.4.5 ERROR
r-release-windows-ix86+x86_64 1.4.5 12.00 114.00 126.00 OK
r-oldrel-windows-ix86+x86_64 1.4.3 11.00 61.00 72.00 ERROR

Check Details

Version: 1.4.5
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘GO.db’ ‘org.Hs.eg.db’ ‘org.Mm.eg.db’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4.5
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘msarc.Rnw’
     ...
    
    > control <- msarc(control_df)
    
    > sample <- msarc.subtract(sample, control)
    
    > sample <- msarc.findGOterms(sample, minCount = 5)
    
     When sourcing ‘msarc.R’:
    Error: Failed to load required package 'GO.db'.
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.4.5
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    
    Error: processing vignette 'msarc.Rnw' failed with diagnostics:
     chunk 1
    Error in msarc.findGOterms(sample, minCount = 5) :
     Failed to load required package 'GO.db'.
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.4.3
Check: R code for possible problems
Result: NOTE
    Error : .onLoad failed in loadNamespace() for 'GO.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    Error : .onLoad failed in loadNamespace() for 'org.Mm.eg.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.4.3
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in 'msarc.Rnw'
     ...
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required package: DBI
    Error : .onLoad failed in loadNamespace() for 'GO.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    
     When sourcing 'msarc.R':
    Error: Failed to load required package 'GO.db'.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64