CRAN Package Check Results for Package msarc

Last updated on 2015-03-27 03:47:49.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.5 1.92 39.96 41.87 OK
r-devel-linux-x86_64-debian-gcc 1.4.5 1.77 39.20 40.98 OK
r-devel-linux-x86_64-fedora-clang 1.4.5 89.98 OK
r-devel-linux-x86_64-fedora-gcc 1.4.5 83.38 OK
r-devel-osx-x86_64-clang 1.4.5 95.70 OK
r-prerel-windows-ix86+x86_64 1.4.5 6.00 60.00 66.00 OK
r-prerel-linux-x86_64 1.4.5 1.72 42.38 44.10 OK
r-prerel-solaris-sparc 1.4.5 544.20 OK
r-prerel-solaris-x86 1.4.5 126.50 OK
r-release-linux-x86_64 1.4.5 3.00 55.98 58.99 OK
r-release-osx-x86_64-mavericks 1.4.5 ERROR
r-release-osx-x86_64-snowleopard 1.4.5 ERROR
r-release-windows-ix86+x86_64 1.4.5 12.00 86.00 98.00 OK
r-oldrel-windows-ix86+x86_64 1.4.3 11.00 61.00 72.00 ERROR

Check Details

Version: 1.4.5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.4.5
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘msarc.Rnw’
     ...
    > control <- msarc(control_df)
    
    > sample <- msarc.subtract(sample, control)
    
    > sample <- msarc.findGOterms(sample, minCount = 5)
    Loading required package: DBI
    
     When sourcing ‘msarc.R’:
    Error: Failed to load required package 'GO.db'.
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.4.3
Check: R code for possible problems
Result: NOTE
    Error : .onLoad failed in loadNamespace() for 'GO.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    Error : .onLoad failed in loadNamespace() for 'org.Mm.eg.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
Flavor: r-oldrel-windows-ix86+x86_64

Version: 1.4.3
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in 'msarc.Rnw'
     ...
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required package: DBI
    Error : .onLoad failed in loadNamespace() for 'GO.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    
     When sourcing 'msarc.R':
    Error: Failed to load required package 'GO.db'.
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64