CRAN Package Check Results for Package msarc

Last updated on 2015-05-26 06:47:00.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.5 1.82 41.83 43.66 OK
r-devel-linux-x86_64-debian-gcc 1.4.5 1.85 40.59 42.44 OK
r-devel-linux-x86_64-fedora-clang 1.4.5 90.75 OK
r-devel-linux-x86_64-fedora-gcc 1.4.5 83.10 OK
r-devel-osx-x86_64-clang 1.4.5 95.34 OK
r-devel-windows-ix86+x86_64 1.4.5 6.00 60.00 66.00 OK
r-patched-linux-x86_64 1.4.5 1.80 40.95 42.74 OK
r-patched-solaris-sparc 1.4.5 575.70 OK
r-patched-solaris-x86 1.4.5 135.10 OK
r-release-linux-x86_64 1.4.5 1.83 43.57 45.40 OK
r-release-osx-x86_64-mavericks 1.4.5 WARN
r-release-osx-x86_64-snowleopard 1.4.5 ERROR
r-release-windows-ix86+x86_64 1.4.5 7.00 60.00 67.00 OK
r-oldrel-windows-ix86+x86_64 1.4.5 13.00 89.00 102.00 OK

Check Details

Version: 1.4.5
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘org.Hs.eg.db’ ‘org.Mm.eg.db’
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4.5
Check: running R code from vignettes
Result: WARN
    Errors in running code in vignettes:
    when running code in ‘msarc.Rnw’
     ...
    > sample <- msarc.subtract(sample, control)
    
    > sample <- msarc.findGOterms(sample, minCount = 5)
    Loading required package: DBI
    
    
     When sourcing ‘msarc.R’:
    Error: error in evaluating the argument 'x' in selecting a method for function 'revmap': Error in loadNamespace(name) : there is no package called ‘org.Hs.eg.db’
    Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4.5
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: DBI
    
    
    Error: processing vignette 'msarc.Rnw' failed with diagnostics:
     chunk 1
    Error in AnnotationDbi::revmap(eg2uniprot) :
     error in evaluating the argument 'x' in selecting a method for function 'revmap': Error in loadNamespace(name) : there is no package called ‘org.Hs.eg.db’
    Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
    
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4.5
Check: package dependencies
Result: ERROR
    Package required but not available: ‘AnnotationDbi’
    
    Packages suggested but not available for checking:
     ‘GO.db’ ‘org.Hs.eg.db’ ‘org.Mm.eg.db’
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard