CRAN Package Check Results for Package msarc

Last updated on 2015-01-27 01:48:08.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4.3 2.30 45.42 47.71 NOTE
r-devel-linux-x86_64-debian-gcc 1.4.3 2.19 45.18 47.37 NOTE
r-devel-linux-x86_64-fedora-clang 1.4.3 114.63 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4.3 109.09 NOTE
r-devel-osx-x86_64-clang 1.4.3 108.29 NOTE
r-devel-windows-ix86+x86_64 1.4.3 7.00 64.00 71.00 NOTE
r-patched-linux-x86_64 1.4.3 3.18 55.21 58.39 OK
r-patched-solaris-sparc 1.4.3 735.20 OK
r-patched-solaris-x86 1.4.3 168.00 OK
r-release-linux-ix86 1.4.3 3.52 66.33 69.85 OK
r-release-linux-x86_64 1.4.3 3.24 58.95 62.19 OK
r-release-osx-x86_64-mavericks 1.4.3 ERROR
r-release-osx-x86_64-snowleopard 1.4.3 ERROR
r-release-windows-ix86+x86_64 1.4.3 13.00 95.00 108.00 OK
r-oldrel-windows-ix86+x86_64 1.4.3 13.00 88.00 101.00 ERROR

Check Details

Version: 1.4.3
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘GO.db’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.4.3
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     print.msarc summary.msarc
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang

Version: 1.4.3
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.4.3
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘msarc.Rnw’
     ...
    
    Loading required package: GenomeInfoDb
    Loading required package: DBI
    Error : .onLoad failed in loadNamespace() for 'GO.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    
     When sourcing ‘msarc.R’:
    Error: Failed to load required package 'GO.db'.
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.4.3
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘msarc.Rnw’
     ...
     'citation("Biobase")', and for packages 'citation("pkgname")'.
    
    Loading required package: DBI
    Error : .onLoad failed in loadNamespace() for 'GO.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    
     When sourcing ‘msarc.R’:
    Error: Failed to load required package 'GO.db'.
    Execution halted
Flavors: r-release-osx-x86_64-snowleopard, r-oldrel-windows-ix86+x86_64

Version: 1.4.3
Check: R code for possible problems
Result: NOTE
    Error : .onLoad failed in loadNamespace() for 'GO.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
    Error : .onLoad failed in loadNamespace() for 'org.Mm.eg.db', details:
     call: match.arg(synchronous, c("off", "normal", "full"))
     error: 'arg' must be NULL or a character vector
Flavor: r-oldrel-windows-ix86+x86_64