CRAN Package Check Results for Package mseapca

Last updated on 2015-09-02 14:47:53.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 0.81 13.90 14.72 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 0.80 13.11 13.91 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 28.09 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 26.12 NOTE
r-devel-osx-x86_64-clang 1.0 30.50 NOTE
r-devel-windows-ix86+x86_64 1.0 3.00 31.00 34.00 NOTE
r-patched-linux-x86_64 1.0 0.91 14.00 14.91 NOTE
r-patched-solaris-sparc 1.0 185.10 NOTE
r-patched-solaris-x86 1.0 41.70 NOTE
r-release-linux-x86_64 1.0 0.98 13.72 14.70 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 3.00 23.00 26.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 5.00 25.00 30.00 NOTE

Check Details

Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
    Deprecated license: BSD
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘sample’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘XML’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘XML’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    csv2list: no visible global function definition for ‘read.csv’
    kgml_i: no visible global function definition for ‘xmlTreeParse’
    kgml_i: no visible global function definition for ‘xmlRoot’
    kgml_i: no visible global function definition for ‘xmlAttrs’
    list2xml: no visible global function definition for ‘xmlNode’
    list2xml: no visible global function definition for ‘append.xmlNode’
    msea_ora: no visible global function definition for ‘fisher.test’
    msea_ora: no visible global function definition for ‘p.adjust’
    msea_sub: no visible global function definition for ‘sd’
    msea_sub: no visible global function definition for ‘cor.test’
    pathway_class: no visible global function definition for ‘untar’
    pca_scaled: no visible binding for global variable ‘sd’
    pca_scaled: no visible global function definition for ‘cor.test’
    pca_scaled: no visible global function definition for ‘p.adjust’
    pca_scaled: no visible binding for global variable ‘var’
    read_pathway: no visible global function definition for ‘xmlTreeParse’
    read_pathway: no visible global function definition for ‘xmlRoot’
    read_pathway: no visible global function definition for ‘xmlToList’
    read_pathway: no visible global function definition for ‘xmlAttrs’
    Undefined global functions or variables:
     append.xmlNode cor.test fisher.test p.adjust read.csv sd untar var
     xmlAttrs xmlNode xmlRoot xmlToList xmlTreeParse
    Consider adding
     importFrom("stats", "cor.test", "fisher.test", "p.adjust", "sd", "var")
     importFrom("utils", "read.csv", "untar")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    kgml_i: no visible global function definition for ‘xmlTreeParse’
    kgml_i: no visible global function definition for ‘xmlRoot’
    kgml_i: no visible global function definition for ‘xmlAttrs’
    list2xml: no visible global function definition for ‘xmlNode’
    list2xml: no visible global function definition for ‘append.xmlNode’
    read_pathway: no visible global function definition for ‘xmlTreeParse’
    read_pathway: no visible global function definition for ‘xmlRoot’
    read_pathway: no visible global function definition for ‘xmlToList’
    read_pathway: no visible global function definition for ‘xmlAttrs’
    Undefined global functions or variables:
     append.xmlNode xmlAttrs xmlNode xmlRoot xmlToList xmlTreeParse
Flavor: r-devel-osx-x86_64-clang

Version: 1.0
Check: R code for possible problems
Result: NOTE
    kgml_i: no visible global function definition for ‘xmlTreeParse’
    kgml_i: no visible global function definition for ‘xmlRoot’
    kgml_i: no visible global function definition for ‘xmlAttrs’
    list2xml: no visible global function definition for ‘xmlNode’
    list2xml: no visible global function definition for ‘append.xmlNode’
    read_pathway: no visible global function definition for ‘xmlTreeParse’
    read_pathway: no visible global function definition for ‘xmlRoot’
    read_pathway: no visible global function definition for ‘xmlToList’
    read_pathway: no visible global function definition for ‘xmlAttrs’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64