CRAN Package Check Results for Package mseapca

Last updated on 2017-04-27 11:53:44.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 0.94 15.94 16.87 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 0.92 15.73 16.65 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 34.82 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 1.0 28.00 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 1.0 5.00 37.00 42.00 NOTE
r-patched-linux-x86_64 1.0 0.95 15.59 16.53 NOTE
r-patched-solaris-sparc 1.0 178.30 NOTE
r-patched-solaris-x86 1.0 47.10 NOTE
r-release-linux-x86_64 1.0 0.90 15.38 16.28 NOTE
r-release-windows-ix86+x86_64 1.0 3.00 33.00 36.00 NOTE
r-release-osx-x86_64 1.0 NOTE
r-oldrel-windows-ix86+x86_64 1.0 8.00 42.00 50.00 NOTE
r-oldrel-osx-x86_64 1.0 NOTE

Check Details

Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
    Deprecated license: BSD
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘sample’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘XML’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘XML’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    csv2list: no visible global function definition for ‘read.csv’
    kgml_i: no visible global function definition for ‘xmlTreeParse’
    kgml_i: no visible global function definition for ‘xmlRoot’
    kgml_i: no visible global function definition for ‘xmlAttrs’
    list2xml: no visible global function definition for ‘xmlNode’
    list2xml: no visible global function definition for ‘append.xmlNode’
    msea_ora: no visible global function definition for ‘fisher.test’
    msea_ora: no visible global function definition for ‘p.adjust’
    msea_sub: no visible global function definition for ‘sd’
    msea_sub: no visible global function definition for ‘cor.test’
    pathway_class: no visible global function definition for ‘untar’
    pca_scaled: no visible binding for global variable ‘sd’
    pca_scaled: no visible global function definition for ‘cor.test’
    pca_scaled: no visible global function definition for ‘p.adjust’
    pca_scaled: no visible binding for global variable ‘var’
    read_pathway: no visible global function definition for ‘xmlTreeParse’
    read_pathway: no visible global function definition for ‘xmlRoot’
    read_pathway: no visible global function definition for ‘xmlToList’
    read_pathway: no visible global function definition for ‘xmlAttrs’
    Undefined global functions or variables:
     append.xmlNode cor.test fisher.test p.adjust read.csv sd untar var
     xmlAttrs xmlNode xmlRoot xmlToList xmlTreeParse
    Consider adding
     importFrom("stats", "cor.test", "fisher.test", "p.adjust", "sd", "var")
     importFrom("utils", "read.csv", "untar")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 1.0
Flags: --no-stop-on-test-error
Check: DESCRIPTION meta-information
Result: NOTE
    Deprecated license: BSD
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-stop-on-test-error
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘sample’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-stop-on-test-error
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘XML’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘XML’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    csv2list: no visible global function definition for ‘read.csv’
    kgml_i: no visible global function definition for ‘xmlTreeParse’
    kgml_i: no visible global function definition for ‘xmlRoot’
    kgml_i: no visible global function definition for ‘xmlAttrs’
    list2xml: no visible global function definition for ‘xmlNode’
    list2xml: no visible global function definition for ‘append.xmlNode’
    msea_ora: no visible global function definition for ‘fisher.test’
    msea_ora: no visible global function definition for ‘p.adjust’
    msea_sub: no visible global function definition for ‘sd’
    msea_sub: no visible global function definition for ‘cor.test’
    pathway_class: no visible global function definition for ‘untar’
    pca_scaled: no visible binding for global variable ‘sd’
    pca_scaled: no visible global function definition for ‘cor.test’
    pca_scaled: no visible global function definition for ‘p.adjust’
    pca_scaled: no visible binding for global variable ‘var’
    read_pathway: no visible global function definition for ‘xmlTreeParse’
    read_pathway: no visible global function definition for ‘xmlRoot’
    read_pathway: no visible global function definition for ‘xmlToList’
    read_pathway: no visible global function definition for ‘xmlAttrs’
    Undefined global functions or variables:
     append.xmlNode cor.test fisher.test p.adjust read.csv sd untar var
     xmlAttrs xmlNode xmlRoot xmlToList xmlTreeParse
    Consider adding
     importFrom("stats", "cor.test", "fisher.test", "p.adjust", "sd", "var")
     importFrom("utils", "read.csv", "untar")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc