CRAN Package Check Results for Package mseapca

Last updated on 2015-07-03 13:46:38.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 1.09 14.28 15.38 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 0.88 13.46 14.33 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 27.96 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 26.36 NOTE
r-devel-osx-x86_64-clang 1.0 27.40 NOTE
r-devel-windows-ix86+x86_64 1.0 3.00 23.00 26.00 NOTE
r-patched-linux-x86_64 1.0 0.87 13.70 14.57 NOTE
r-patched-solaris-sparc 1.0 217.00 NOTE
r-patched-solaris-x86 1.0 41.40 NOTE
r-release-linux-x86_64 1.0 0.99 14.03 15.02 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 3.00 27.00 30.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 5.00 25.00 30.00 NOTE

Check Details

Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
    Deprecated license: BSD
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 1.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘sample’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘XML’ which was already attached by Depends.
     Please remove these calls from your code.
    Package in Depends field not imported from: ‘XML’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    csv2list: no visible global function definition for ‘read.csv’
    kgml_i: no visible global function definition for ‘xmlTreeParse’
    kgml_i: no visible global function definition for ‘xmlRoot’
    kgml_i: no visible global function definition for ‘xmlAttrs’
    list2xml: no visible global function definition for ‘xmlNode’
    list2xml: no visible global function definition for ‘append.xmlNode’
    msea_ora: no visible global function definition for ‘fisher.test’
    msea_ora: no visible global function definition for ‘p.adjust’
    msea_sub: no visible global function definition for ‘sd’
    msea_sub: no visible global function definition for ‘cor.test’
    pathway_class: no visible global function definition for ‘untar’
    pca_scaled: no visible binding for global variable ‘sd’
    pca_scaled: no visible global function definition for ‘cor.test’
    pca_scaled: no visible global function definition for ‘p.adjust’
    pca_scaled: no visible binding for global variable ‘var’
    read_pathway: no visible global function definition for ‘xmlTreeParse’
    read_pathway: no visible global function definition for ‘xmlRoot’
    read_pathway: no visible global function definition for ‘xmlToList’
    read_pathway: no visible global function definition for ‘xmlAttrs’
    Undefined global functions or variables:
     append.xmlNode cor.test fisher.test p.adjust read.csv sd untar var
     xmlAttrs xmlNode xmlRoot xmlToList xmlTreeParse
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0
Check: R code for possible problems
Result: NOTE
    kgml_i: no visible global function definition for ‘xmlTreeParse’
    kgml_i: no visible global function definition for ‘xmlRoot’
    kgml_i: no visible global function definition for ‘xmlAttrs’
    list2xml: no visible global function definition for ‘xmlNode’
    list2xml: no visible global function definition for ‘append.xmlNode’
    read_pathway: no visible global function definition for ‘xmlTreeParse’
    read_pathway: no visible global function definition for ‘xmlRoot’
    read_pathway: no visible global function definition for ‘xmlToList’
    read_pathway: no visible global function definition for ‘xmlAttrs’
    Undefined global functions or variables:
     append.xmlNode xmlAttrs xmlNode xmlRoot xmlToList xmlTreeParse
Flavor: r-devel-osx-x86_64-clang

Version: 1.0
Check: R code for possible problems
Result: NOTE
    csv2list: no visible global function definition for 'read.csv'
    kgml_i: no visible global function definition for 'xmlTreeParse'
    kgml_i: no visible global function definition for 'xmlRoot'
    kgml_i: no visible global function definition for 'xmlAttrs'
    list2xml: no visible global function definition for 'xmlNode'
    list2xml: no visible global function definition for 'append.xmlNode'
    msea_ora: no visible global function definition for 'fisher.test'
    msea_ora: no visible global function definition for 'p.adjust'
    msea_sub: no visible global function definition for 'sd'
    msea_sub: no visible global function definition for 'cor.test'
    pathway_class: no visible global function definition for 'untar'
    pca_scaled: no visible binding for global variable 'sd'
    pca_scaled: no visible global function definition for 'cor.test'
    pca_scaled: no visible global function definition for 'p.adjust'
    pca_scaled: no visible binding for global variable 'var'
    read_pathway: no visible global function definition for 'xmlTreeParse'
    read_pathway: no visible global function definition for 'xmlRoot'
    read_pathway: no visible global function definition for 'xmlToList'
    read_pathway: no visible global function definition for 'xmlAttrs'
Flavor: r-devel-windows-ix86+x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    kgml_i: no visible global function definition for ‘xmlTreeParse’
    kgml_i: no visible global function definition for ‘xmlRoot’
    kgml_i: no visible global function definition for ‘xmlAttrs’
    list2xml: no visible global function definition for ‘xmlNode’
    list2xml: no visible global function definition for ‘append.xmlNode’
    read_pathway: no visible global function definition for ‘xmlTreeParse’
    read_pathway: no visible global function definition for ‘xmlRoot’
    read_pathway: no visible global function definition for ‘xmlToList’
    read_pathway: no visible global function definition for ‘xmlAttrs’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64