CRAN Package Check Results for Package mseq

Last updated on 2014-12-19 23:47:01.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 0.94 24.58 25.52 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 0.91 23.60 24.51 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 50.15 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 45.56 NOTE
r-devel-osx-x86_64-clang 1.2 45.97 NOTE
r-devel-windows-ix86+x86_64 1.2 4.00 44.00 48.00 NOTE
r-patched-linux-x86_64 1.2 0.95 25.41 26.36 NOTE
r-patched-solaris-sparc 1.2 299.00 NOTE
r-patched-solaris-x86 1.2 64.80 NOTE
r-release-linux-ix86 1.2 1.30 31.08 32.38 NOTE
r-release-linux-x86_64 1.2 0.96 24.60 25.56 NOTE
r-release-osx-x86_64-mavericks 1.2 NOTE
r-release-osx-x86_64-snowleopard 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 4.00 42.00 46.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 5.00 35.00 40.00 NOTE

Check Details

Version: 1.2
Check: top-level files
Result: NOTE
    File
     LICENSE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: ‘gbm’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: R code for possible problems
Result: NOTE
    martCV: no visible global function definition for ‘gbm’
    martPred: no visible global function definition for ‘predict.gbm’
    martTrain: no visible global function definition for ‘gbm’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.2
Check: Rd line widths
Result: NOTE
    Rd file 'expData2nt.Rd':
     \examples lines wider than 100 characters:
     data <- expData2nt(g1_part, 2, 1) # In real datasets, the surrounding sequences should be set longer.
    
    Rd file 'martCV.Rd':
     \usage lines wider than 90 characters:
     martCV(data, fold = 5, seed = 281142, shrinkage = 0.06, interaction.depth = 10, n.trees = 2000, small_count = 0.5)
     \examples lines wider than 100 characters:
     # To shorten the running time, this example uses small values of interaction.depth and n.trees. For real datasets, it is strongly sugg ... [TRUNCATED]
    
    Rd file 'martPred.Rd':
     \examples lines wider than 100 characters:
     data <- expData(g1_part, 2, 3) # here the surrounding sequences is only of length 5. In real datasets, it should be larger.
    
    Rd file 'martTrain.Rd':
     \usage lines wider than 90 characters:
     martTrain(data, shrinkage = 0.06, interaction.depth = 10, n.trees = 2000, small_count = 0.5)
    
    Rd file 'mseq-package.Rd':
     \examples lines wider than 100 characters:
     data <- expData(g1_part, 2, 3) # here the surrounding sequences is only of length 5. In real datasets, it should be larger.
     # To shorten the running time, this example uses small values of interaction.depth and n.trees. For real datasets, it is strongly sugg ... [TRUNCATED]
     data <- expData2nt(g1_part, 2, 1) # here the surrounding sequences is only of length 3. In real datasets, it should be larger.
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64