CRAN Package Check Results for Package mseq

Last updated on 2014-07-31 17:48:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2 1.09 28.20 29.28 NOTE
r-devel-linux-x86_64-debian-gcc 1.2 0.92 24.18 25.11 NOTE
r-devel-linux-x86_64-fedora-clang 1.2 50.41 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2 47.92 NOTE
r-devel-osx-x86_64-clang 1.2 45.53 NOTE
r-devel-windows-ix86+x86_64 1.2 5.00 37.00 42.00 NOTE
r-patched-linux-x86_64 1.2 0.91 25.05 25.96 NOTE
r-patched-solaris-sparc 1.2 311.70 NOTE
r-patched-solaris-x86 1.2 63.60 NOTE
r-release-linux-ix86 1.2 1.34 32.50 33.83 NOTE
r-release-linux-x86_64 1.2 0.94 24.34 25.28 NOTE
r-release-osx-x86_64-mavericks 1.2 NOTE
r-release-osx-x86_64-snowleopard 1.2 NOTE
r-release-windows-ix86+x86_64 1.2 8.00 56.00 64.00 NOTE
r-oldrel-windows-ix86+x86_64 1.2 8.00 48.00 56.00 NOTE

Check Details

Version: 1.2
Check: top-level files
Result: NOTE
    File
     LICENSE
    is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: dependencies in R code
Result: NOTE
    Package in Depends field not imported from: gbm
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.2
Check: Rd line widths
Result: NOTE
    Rd file 'expData2nt.Rd':
     \examples lines wider than 100 characters:
     data <- expData2nt(g1_part, 2, 1) # In real datasets, the surrounding sequences should be set longer.
    
    Rd file 'martCV.Rd':
     \usage lines wider than 90 characters:
     martCV(data, fold = 5, seed = 281142, shrinkage = 0.06, interaction.depth = 10, n.trees = 2000, small_count = 0.5)
     \examples lines wider than 100 characters:
     # To shorten the running time, this example uses small values of interaction.depth and n.trees. For real datasets, it is strongly sugg ... [TRUNCATED]
    
    Rd file 'martPred.Rd':
     \examples lines wider than 100 characters:
     data <- expData(g1_part, 2, 3) # here the surrounding sequences is only of length 5. In real datasets, it should be larger.
    
    Rd file 'martTrain.Rd':
     \usage lines wider than 90 characters:
     martTrain(data, shrinkage = 0.06, interaction.depth = 10, n.trees = 2000, small_count = 0.5)
    
    Rd file 'mseq-package.Rd':
     \examples lines wider than 100 characters:
     data <- expData(g1_part, 2, 3) # here the surrounding sequences is only of length 5. In real datasets, it should be larger.
     # To shorten the running time, this example uses small values of interaction.depth and n.trees. For real datasets, it is strongly sugg ... [TRUNCATED]
     data <- expData2nt(g1_part, 2, 1) # here the surrounding sequences is only of length 3. In real datasets, it should be larger.
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc