CRAN Package Check Results for Package msr

Last updated on 2015-05-24 08:48:35.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.4.1 8.75 50.82 59.57 WARN
r-devel-linux-x86_64-debian-gcc 0.4.1 9.65 47.06 56.72 WARN
r-devel-linux-x86_64-fedora-clang 0.4.1 123.49 WARN
r-devel-linux-x86_64-fedora-gcc 0.4.1 108.78 WARN
r-devel-osx-x86_64-clang 0.4.1 94.54 WARN
r-devel-windows-ix86+x86_64 0.4.1 40.00 109.00 149.00 WARN
r-patched-linux-x86_64 0.4.1 9.52 47.98 57.50 WARN
r-patched-solaris-sparc 0.4.1 670.70 NOTE
r-patched-solaris-x86 0.4.1 163.20 NOTE
r-release-linux-x86_64 0.4.1 10.50 47.36 57.86 WARN
r-release-osx-x86_64-mavericks 0.4.1 WARN
r-release-osx-x86_64-snowleopard 0.4.1 ERROR
r-release-windows-ix86+x86_64 0.4.1 39.00 103.00 142.00 WARN
r-oldrel-windows-ix86+x86_64 0.4.1 42.00 123.00 165.00 WARN

Check Details

Version: 0.4.1
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘Matrix’ ‘class’ ‘glmnet’ ‘stats4’ ‘e1071’ ‘rgl’ ‘RColorBrewer’
     ‘colorspace’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     kd_dump.cpp:444:1: warning: control may reach end of non-void function [-Wreturn-type]
    Found the following additional warnings:
     kd_dump.cpp:444:1: warning: control may reach end of non-void function [-Wreturn-type]
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 0.4.1
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     ‘Matrix’ ‘RColorBrewer’ ‘class’ ‘colorspace’ ‘e1071’ ‘glmnet’ ‘rgl’
     ‘stats4’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.1
Check: R code for possible problems
Result: NOTE
    mouseSelect : mouseBegin : createSelectFunction: no visible global
     function definition for ‘rgl.projection’
    mouseSelect : mouseBegin : createSelectFunction : <anonymous>: no
     visible global function definition for ‘rgl.user2window’
    mouseSelect : mouseBegin: no visible global function definition for
     ‘rgl.pop’
    mouseSelect : mouseBegin: no visible global function definition for
     ‘shade3d’
    mouseSelect : mouseBegin: no visible global function definition for
     ‘addNormals’
    mouseSelect: no visible global function definition for
     ‘rgl.setMouseCallbacks’
    msc.elnet : buildelnet: no visible global function definition for
     ‘cv.glmnet’
    msc.elnet : buildelnet: no visible global function definition for
     ‘glmnet’
    msc.nn.svm: no visible global function definition for ‘svm’
    msc.slm.elnet : buildmodel: no visible global function definition for
     ‘cv.glmnet’
    msr: no visible global function definition for ‘svm’
    msr.elnet : buildlm: no visible global function definition for
     ‘cv.glmnet’
    msr.elnet : buildslm: no visible global function definition for
     ‘cv.glmnet’
    msr.elnet: no visible global function definition for ‘svm’
    plot.mscPlot: no visible global function definition for ‘rgl.cur’
    plot.mscPlot: no visible global function definition for ‘open3d’
    plot.mscPlot: no visible global function definition for ‘view3d’
    plot.mscPlot: no visible global function definition for ‘light3d’
    plot.mscPlot: no visible global function definition for ‘bg3d’
    plot.mscPlot: no visible global function definition for ‘rgl.clear’
    plot.mscPlot: no visible global function definition for ‘spheres3d’
    plot.mscPlot: no visible global function definition for ‘shade3d’
    plot.mscPlot: no visible global function definition for ‘addNormals’
    plot.mscPlot: no visible global function definition for ‘text3d’
    plot.mscPlot: no visible global function definition for ‘lines3d’
    plot.mscPlot: no visible global function definition for ‘segments3d’
    plotCurves: no visible global function definition for ‘hex’
    plotCurves: no visible global function definition for ‘mixcolor’
    plotCurves: no visible global function definition for ‘hex2RGB’
    plotCurves: no visible global function definition for ‘RGB’
    predict.msc.svm: no visible global function definition for ‘svm’
    scene.mscPlot: no visible global function definition for ‘brewer.pal’
    scene.mscPlot: no visible binding for global variable ‘brewer.pal.info’
    scene.mscPlot: no visible global function definition for ‘cylinder3d’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     kd_dump.cpp:444:1: warning: control reaches end of non-void function [-Wreturn-type]
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.4.1
Check: examples
Result: ERROR
    Running examples in ‘msr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: plot.msc
    > ### Title: Visualization of the Morse-Smale Summary of High-Dimensional
    > ### Scalar Functions
    > ### Aliases: plot.msc plot.msc.svm plot.msc.kd plot.mscPlot
    > ### Keywords:
    > ### hplot,cluster,multivariate,toplogy,nonparametric,models,nonlinear
    >
    > ### ** Examples
    >
    >
    > data(fourpeaks)
    > d <- fourpeaks()
    >
    > #Build Morse-Smale complex of d
    > ms <- msc.nn(y=d[,1], x=d[, 2:3], pLevel=0.1, knn = 15)
    >
    > # Plot the ms summary
    > p <- plot(ms)
    Sat Mar 21 00:06:19 hagal.research.att.com R[6967] <Error>: unknown error code: invalid pixel format
    Sat Mar 21 00:06:19 hagal.research.att.com R[6967] <Error>: kCGErrorFailure: Set a breakpoint @ CGErrorBreakpoint() to catch errors as they are logged.
    X Error of failed request: GLXBadContext
     Major opcode of failed request: 0 ()
     Serial number of failed request: 27
     Current serial number in output stream: 27
Flavor: r-release-osx-x86_64-snowleopard