CRAN Package Check Results for Package mstate

Last updated on 2016-12-03 11:47:37.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.9 3.26 55.30 58.56 ERROR
r-devel-linux-x86_64-debian-gcc 0.2.9 3.11 52.99 56.10 ERROR
r-devel-linux-x86_64-fedora-clang 0.2.9 131.86 ERROR
r-devel-linux-x86_64-fedora-gcc 0.2.9 136.37 ERROR
r-devel-macos-x86_64-clang 0.2.9 90.90 ERROR
r-devel-windows-ix86+x86_64 0.2.9 10.00 140.00 150.00 ERROR
r-patched-linux-x86_64 0.2.9 3.02 49.26 52.28 ERROR
r-patched-solaris-sparc 0.2.9 672.90 ERROR
r-patched-solaris-x86 0.2.9 140.00 ERROR
r-release-linux-x86_64 0.2.9 3.02 49.00 52.02 ERROR
r-release-osx-x86_64-mavericks 0.2.9 OK
r-release-windows-ix86+x86_64 0.2.9 13.00 174.00 187.00 ERROR
r-oldrel-windows-ix86+x86_64 0.2.9 15.00 114.00 129.00 ERROR

Check Details

Version: 0.2.9
Check: examples
Result: ERROR
    Running examples in ‘mstate-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: crprep
    > ### Title: Function to create weighted data set for competing risks
    > ### analyses
    > ### Aliases: crprep crprep.default
    > ### Keywords: datagen survival
    >
    > ### ** Examples
    >
    > data(aidssi)
    > aidssi.w <- crprep("time", "cause", data=aidssi, trans=c("AIDS","SI"),
    + cens="event-free", id="patnr", keep="ccr5")
    >
    > # calculate cause-specific cumulative incidence, no truncation,
    > # compare with Cuminc (also from mstate)
    > ci <- Cuminc(aidssi$time, aidssi$status)
    Error in apply(CIs, 1, sum) : dim(X) must have a positive length
    Calls: Cuminc -> apply
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.2.9
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: survival
    
    Error: processing vignette ‘Tutorial.Rnw’ failed with diagnostics:
     chunk 55 (label = Cuminc1)
    Error in apply(CIs, 1, sum) : dim(X) must have a positive length
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 0.2.9
Check: examples
Result: ERROR
    Running examples in ‘mstate-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: crprep
    > ### Title: Function to create weighted data set for competing risks
    > ### analyses
    > ### Aliases: crprep crprep.default
    > ### Keywords: datagen survival
    >
    > ### ** Examples
    >
    > data(aidssi)
    > aidssi.w <- crprep("time", "cause", data=aidssi, trans=c("AIDS","SI"),
    + cens="event-free", id="patnr", keep="ccr5")
    >
    > # calculate cause-specific cumulative incidence, no truncation,
    > # compare with Cuminc (also from mstate)
    > ci <- Cuminc(aidssi$time, aidssi$status)
    Error in apply(CIs, 1, sum) : dim(X) must have a positive length
    Calls: Cuminc -> apply
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-patched-solaris-sparc, r-patched-solaris-x86

Version: 0.2.9
Check: running examples for arch ‘i386’
Result: ERROR
    Running examples in 'mstate-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: crprep
    > ### Title: Function to create weighted data set for competing risks
    > ### analyses
    > ### Aliases: crprep crprep.default
    > ### Keywords: datagen survival
    >
    > ### ** Examples
    >
    > data(aidssi)
    > aidssi.w <- crprep("time", "cause", data=aidssi, trans=c("AIDS","SI"),
    + cens="event-free", id="patnr", keep="ccr5")
    >
    > # calculate cause-specific cumulative incidence, no truncation,
    > # compare with Cuminc (also from mstate)
    > ci <- Cuminc(aidssi$time, aidssi$status)
    Error in apply(CIs, 1, sum) : dim(X) must have a positive length
    Calls: Cuminc -> apply
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.9
Check: running examples for arch ‘x64’
Result: ERROR
    Running examples in 'mstate-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: crprep
    > ### Title: Function to create weighted data set for competing risks
    > ### analyses
    > ### Aliases: crprep crprep.default
    > ### Keywords: datagen survival
    >
    > ### ** Examples
    >
    > data(aidssi)
    > aidssi.w <- crprep("time", "cause", data=aidssi, trans=c("AIDS","SI"),
    + cens="event-free", id="patnr", keep="ccr5")
    >
    > # calculate cause-specific cumulative incidence, no truncation,
    > # compare with Cuminc (also from mstate)
    > ci <- Cuminc(aidssi$time, aidssi$status)
    Error in apply(CIs, 1, sum) : dim(X) must have a positive length
    Calls: Cuminc -> apply
    Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.9
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in 'Tutorial.Rnw'
     ...
    
    > text(8, 0.71, adj = 0, "AIDS")
    
    > text(8, 0.32, adj = 0, "SI")
    
    > ci <- Cuminc(time = si$time, status = si$status)
    
     When sourcing 'Tutorial.R':
    Error: dim(X) must have a positive length
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.2.9
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Loading required package: survival
    
    Error: processing vignette 'Tutorial.Rnw' failed with diagnostics:
     chunk 55 (label = Cuminc1)
    Error in apply(CIs, 1, sum) : dim(X) must have a positive length
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64