CRAN Package Check Results for Package multcompView

Last updated on 2014-07-29 20:49:08.

Check Details

Version: 0.1-5
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to grid which was already attached by Depends.
     Please remove these calls from your code.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1-5
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: pgirmess
Flavor: r-release-osx-x86_64-mavericks

Version: 0.1-5
Check: R code for possible problems
Result: NOTE
    multcompBoxplot : kruskalmc.: no visible global function definition for
     kruskalmc
Flavor: r-release-osx-x86_64-mavericks

Version: 0.1-5
Check: examples
Result: ERROR
    Running examples in multcompView-Ex.R failed
    The error most likely occurred in:
    
    > ### Name: extract_p
    > ### Title: Extracts p-values
    > ### Aliases: extract_p extract_p.default extract_p.TukeyHSD extract_p.mc
    > ### Keywords: manip array
    >
    > ### ** Examples
    >
    > experiment <- data.frame(treatments = gl(11, 20, labels = c("dtl", "ctrl", "treat1",
    + "treat2", "treatA2", "treatB", "treatB2",
    + "treatC", "treatD", "treatA1", "treatX")),
    + y = c(rnorm(20, 10, 5), rnorm(20, 20, 5), rnorm(20, 22, 5), rnorm(20, 24, 5),
    + rnorm(20, 35, 5), rnorm(20, 37, 5), rnorm(20, 40, 5), rnorm(20, 43, 5),
    + rnorm(20, 45, 5), rnorm(20, 60, 5), rnorm(20, 60, 5)))
    > exp_tukey <- TukeyHSD(exp_aov <- aov(y ~ treatments, data = experiment))
    >
    > extract_p(exp_tukey)
    $treatments
     ctrl-dtl treat1-dtl treat2-dtl treatA2-dtl treatB-dtl
     3.441307e-07 9.229284e-12 9.603429e-14 0.000000e+00 0.000000e+00
     treatB2-dtl treatC-dtl treatD-dtl treatA1-dtl treatX-dtl
     0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00
     treat1-ctrl treat2-ctrl treatA2-ctrl treatB-ctrl treatB2-ctrl
     7.596142e-01 8.822360e-02 7.771561e-14 0.000000e+00 0.000000e+00
     treatC-ctrl treatD-ctrl treatA1-ctrl treatX-ctrl treat2-treat1
     0.000000e+00 0.000000e+00 0.000000e+00 0.000000e+00 9.796686e-01
     treatA2-treat1 treatB-treat1 treatB2-treat1 treatC-treat1 treatD-treat1
     1.589839e-13 9.370282e-14 5.428991e-14 0.000000e+00 0.000000e+00
     treatA1-treat1 treatX-treat1 treatA2-treat2 treatB-treat2 treatB2-treat2
     0.000000e+00 0.000000e+00 1.306641e-10 1.271205e-13 8.848478e-14
     treatC-treat2 treatD-treat2 treatA1-treat2 treatX-treat2 treatB-treatA2
     4.263256e-14 0.000000e+00 0.000000e+00 0.000000e+00 9.637208e-01
    treatB2-treatA2 treatC-treatA2 treatD-treatA2 treatA1-treatA2 treatX-treatA2
     4.881959e-01 1.601785e-02 7.046808e-12 0.000000e+00 0.000000e+00
     treatB2-treatB treatC-treatB treatD-treatB treatA1-treatB treatX-treatB
     9.980911e-01 4.420736e-01 1.714633e-08 0.000000e+00 0.000000e+00
     treatC-treatB2 treatD-treatB2 treatA1-treatB2 treatX-treatB2 treatD-treatC
     9.496096e-01 2.110571e-06 0.000000e+00 0.000000e+00 1.209856e-03
     treatA1-treatC treatX-treatC treatA1-treatD treatX-treatD treatX-treatA1
     0.000000e+00 0.000000e+00 7.967960e-12 9.148238e-14 9.369627e-01
    
    >
    > require(pgirmess)
    Loading required package: pgirmess
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called pgirmess
    > extract_p(kruskalmc(y ~ treatments, data = experiment))
    Error in extract_p(kruskalmc(y ~ treatments, data = experiment)) :
     could not find function "kruskalmc"
    Execution halted
Flavor: r-release-osx-x86_64-mavericks