CRAN Package Check Results for Package multic

Last updated on 2015-06-30 15:47:14.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.8.1 16.15 19.36 35.51 WARN
r-devel-linux-x86_64-debian-gcc 0.3.8.1 17.88 19.06 36.94 NOTE
r-devel-linux-x86_64-fedora-clang 0.3.8.1 94.39 WARN
r-devel-linux-x86_64-fedora-gcc 0.3.8.1 69.48 NOTE
r-devel-osx-x86_64-clang 0.3.8.1 74.70 WARN
r-patched-linux-x86_64 0.3.8.1 17.82 21.18 39.00 NOTE
r-patched-solaris-sparc 0.3.8.1 431.20 NOTE
r-patched-solaris-x86 0.3.8.1 105.20 NOTE
r-release-linux-x86_64 0.3.8.1 18.02 20.09 38.11 NOTE
r-release-osx-x86_64-mavericks 0.3.8.1 WARN

Check Details

Version: 0.3.8.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Maxfun_source.cpp:148:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:149:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:151:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:159:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:160:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:162:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:209:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:216:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:226:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:227:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:306:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:308:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:351:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:353:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:401:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:438:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:441:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:506:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:508:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:623:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:625:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:729:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:730:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:838:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:907:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:927:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:928:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:946:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1254:30: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1277:30: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1661:49: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1675:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1677:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1834:49: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1875:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1877:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2212:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2230:49: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2252:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2259:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2949:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:3825:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:3838:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:3841:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4231:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4235:42: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4458:40: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4459:33: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4880:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4889:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5372:23: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5376:21: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5424:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5432:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5473:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5481:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5635:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5661:42: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5663:41: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5664:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5694:22: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 0.3.8.1
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘docs’ ‘examples’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.3.8.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘kinship2’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Missing or unexported object: ‘kinship2::gchol’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 0.3.8.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.family.lods t.rank
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3.8.1
Check: R code for possible problems
Result: NOTE
    addGE: no visible global function definition for ‘plot’
    addGE: no visible global function definition for ‘lines’
    addGE: no visible global function definition for ‘par’
    calculate.cor.values: no visible global function definition for ‘cor’
    calculate.descriptives: no visible binding for global variable ‘var’
    calculate.initial.values: no visible global function definition for
     ‘coefficients’
    calculate.initial.values: no visible global function definition for
     ‘residuals’
    gene.eff: no visible global function definition for ‘pnorm’
    lm.ready.check : <anonymous>: no visible global function definition for
     ‘na.omit’
    load.effects: no visible global function definition for ‘pt’
    load.inv.exp.sec.der.fixed: no visible global function definition for
     ‘read.table’
    make.kinship.file: no visible global function definition for
     ‘makekinship’
    make.kinship.file: no visible global function definition for
     ‘write.table’
    matplot.multic: no visible global function definition for ‘plot’
    matplot.multic: no visible global function definition for ‘lines’
    mergeWithKinship: no visible global function definition for
     ‘read.table’
    mergeWithKinship: no visible global function definition for
     ‘write.table’
    merlin2mloci: no visible global function definition for ‘read.table’
    merlin2mloci: no visible global function definition for ‘write.table’
    multic: no visible binding for global variable ‘na.pass’
    multic: no visible global function definition for ‘model.extract’
    multic: no visible global function definition for ‘model.matrix’
    multic: no visible global function definition for ‘terms’
    multic: no visible global function definition for ‘lm’
    multic.kurtosis: no visible global function definition for ‘var’
    multic.skewness: no visible binding for global variable ‘sd’
    pchisq.mix: no visible global function definition for ‘pchisq’
    phi2share: no visible global function definition for ‘read.table’
    phi2share: no visible global function definition for ‘write.table’
    plot.family.lods: no visible global function definition for ‘matplot’
    plot.family.lods: no visible global function definition for ‘par’
    plot.family.lods: no visible global function definition for ‘plot’
    plot.multic: no visible global function definition for ‘plot’
    plot.multic: no visible global function definition for ‘abline’
    plotFamilyLods: no visible global function definition for ‘matplot’
    plotFamilyLods: no visible global function definition for ‘par’
    plotFamilyLods: no visible global function definition for ‘plot’
    read.pedindex.out: no visible global function definition for ‘read.fwf’
    residuals.multic: no visible global function definition for ‘find’
    solar2mloci: no visible global function definition for ‘read.table’
    solar2mloci: no visible global function definition for ‘na.omit’
    t.rank: no visible global function definition for ‘qnorm’
    tRank: no visible global function definition for ‘qnorm’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang

Version: 0.3.8.1
Check: R code for possible problems
Result: NOTE
    make.kinship.file: no visible global function definition for
     ‘makekinship’
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks