CRAN Package Check Results for Package multic

Last updated on 2015-08-02 03:48:17.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.8.1 16.03 19.34 35.37 WARN
r-devel-linux-x86_64-debian-gcc 0.3.8.1 18.20 19.62 37.81 NOTE
r-devel-linux-x86_64-fedora-clang 0.3.8.1 93.78 WARN
r-devel-linux-x86_64-fedora-gcc 0.3.8.1 67.38 NOTE
r-devel-osx-x86_64-clang 0.3.8.1 70.64 WARN
r-patched-linux-x86_64 0.3.8.1 18.08 19.42 37.50 NOTE
r-patched-solaris-sparc 0.3.8.1 421.20 NOTE
r-patched-solaris-x86 0.3.8.1 102.00 NOTE
r-release-linux-x86_64 0.3.8.1 17.89 19.82 37.71 NOTE
r-release-osx-x86_64-mavericks 0.3.8.1 WARN

Check Details

Version: 0.3.8.1
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Maxfun_source.cpp:148:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:149:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:151:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:159:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:160:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:162:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:209:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:216:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:226:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:227:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:306:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:308:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:351:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:353:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:401:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:438:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:441:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:506:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:508:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:623:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:625:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:729:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:730:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:838:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:907:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:927:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:928:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:946:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1254:30: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1277:30: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1661:49: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1675:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1677:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1834:49: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1875:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:1877:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2212:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2230:49: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2252:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2259:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:2949:47: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:3825:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:3838:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:3841:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4231:28: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4235:42: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4458:40: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4459:33: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4880:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:4889:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5372:23: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5376:21: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5424:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5432:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5473:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5481:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5635:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5661:42: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5663:41: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5664:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
     Maxfun_source.cpp:5694:22: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-release-osx-x86_64-mavericks

Version: 0.3.8.1
Check: top-level files
Result: NOTE
    Non-standard files/directories found at top level:
     ‘docs’ ‘examples’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 0.3.8.1
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to ‘kinship2’ in package code.
     Please use :: or requireNamespace() instead.
     See section 'Suggested packages' in the 'Writing R Extensions' manual.
    Missing or unexported object: ‘kinship2::gchol’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks

Version: 0.3.8.1
Check: S3 generic/method consistency
Result: NOTE
    Found the following apparent S3 methods exported but not registered:
     plot.family.lods t.rank
    See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
    manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3.8.1
Check: R code for possible problems
Result: NOTE
    addGE: no visible global function definition for ‘plot’
    addGE: no visible global function definition for ‘lines’
    addGE: no visible global function definition for ‘par’
    calculate.cor.values: no visible global function definition for ‘cor’
    calculate.descriptives: no visible binding for global variable ‘var’
    calculate.initial.values: no visible global function definition for
     ‘coefficients’
    calculate.initial.values: no visible global function definition for
     ‘residuals’
    gene.eff: no visible global function definition for ‘pnorm’
    lm.ready.check : <anonymous>: no visible global function definition for
     ‘na.omit’
    load.effects: no visible global function definition for ‘pt’
    load.inv.exp.sec.der.fixed: no visible global function definition for
     ‘read.table’
    make.kinship.file: no visible global function definition for
     ‘makekinship’
    make.kinship.file: no visible global function definition for
     ‘write.table’
    matplot.multic: no visible global function definition for ‘plot’
    matplot.multic: no visible global function definition for ‘lines’
    mergeWithKinship: no visible global function definition for
     ‘read.table’
    mergeWithKinship: no visible global function definition for
     ‘write.table’
    merlin2mloci: no visible global function definition for ‘read.table’
    merlin2mloci: no visible global function definition for ‘write.table’
    multic: no visible binding for global variable ‘na.pass’
    multic: no visible global function definition for ‘model.extract’
    multic: no visible global function definition for ‘model.matrix’
    multic: no visible global function definition for ‘terms’
    multic: no visible global function definition for ‘lm’
    multic.kurtosis: no visible global function definition for ‘var’
    multic.skewness: no visible binding for global variable ‘sd’
    pchisq.mix: no visible global function definition for ‘pchisq’
    phi2share: no visible global function definition for ‘read.table’
    phi2share: no visible global function definition for ‘write.table’
    plot.family.lods: no visible global function definition for ‘matplot’
    plot.family.lods: no visible global function definition for ‘par’
    plot.family.lods: no visible global function definition for ‘plot’
    plot.multic: no visible global function definition for ‘plot’
    plot.multic: no visible global function definition for ‘abline’
    plotFamilyLods: no visible global function definition for ‘matplot’
    plotFamilyLods: no visible global function definition for ‘par’
    plotFamilyLods: no visible global function definition for ‘plot’
    read.pedindex.out: no visible global function definition for ‘read.fwf’
    residuals.multic: no visible global function definition for ‘find’
    solar2mloci: no visible global function definition for ‘read.table’
    solar2mloci: no visible global function definition for ‘na.omit’
    t.rank: no visible global function definition for ‘qnorm’
    tRank: no visible global function definition for ‘qnorm’
    Undefined global functions or variables:
     abline coefficients cor find lines lm makekinship matplot
     model.extract model.matrix na.omit na.pass par pchisq plot pnorm pt
     qnorm read.fwf read.table residuals sd terms var write.table
    Consider adding
     importFrom("graphics", "abline", "lines", "matplot", "par", "plot")
     importFrom("stats", "coefficients", "cor", "lm", "model.extract",
     "model.matrix", "na.omit", "na.pass", "pchisq", "pnorm",
     "pt", "qnorm", "residuals", "sd", "terms", "var")
     importFrom("utils", "find", "read.fwf", "read.table", "write.table")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.3.8.1
Check: R code for possible problems
Result: NOTE
    make.kinship.file: no visible global function definition for
     ‘makekinship’
    Undefined global functions or variables:
     makekinship
Flavor: r-devel-osx-x86_64-clang

Version: 0.3.8.1
Check: R code for possible problems
Result: NOTE
    make.kinship.file: no visible global function definition for
     ‘makekinship’
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks