CRAN Package Check Results for Package multitable

Last updated on 2016-02-14 23:48:09.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 1.6 0.82 20.95 21.78 WARN
r-devel-linux-x86_64-fedora-clang 1.6 40.55 WARN
r-devel-linux-x86_64-fedora-gcc 1.6 38.86 WARN
r-devel-osx-x86_64-clang 1.6 45.70 WARN
r-devel-windows-ix86+x86_64 1.6 6.00 38.00 44.00 WARN
r-patched-linux-x86_64 1.6 0.84 25.91 26.76 ERROR
r-patched-solaris-sparc 1.6 288.00 ERROR
r-patched-solaris-x86 1.6 62.60 ERROR
r-release-linux-x86_64 1.6 0.96 25.18 26.14 ERROR
r-release-osx-x86_64-mavericks 1.6 NOTE
r-release-windows-ix86+x86_64 1.6 5.00 46.00 51.00 ERROR
r-oldrel-windows-ix86+x86_64 1.6 6.00 43.00 49.00 ERROR

Check Details

Version: 1.6
Check: R code for possible problems
Result: NOTE
    .onAttach: no visible global function definition for ‘packageVersion’
    Ops.data.list: no visible global function definition for ‘na.omit’
    [.data.list: no visible global function definition for ‘complete.cases’
    aperm.factor: no visible global function definition for ‘as’
    read.fourthcorner: no visible global function definition for
     ‘read.table’
    read.matrix: no visible global function definition for ‘read.table’
    read.multitable: no visible binding for global variable ‘read.table’
    str.data.list: no visible global function definition for ‘str’
    variable_margins: no visible binding for global variable ‘na.omit’
    Undefined global functions or variables:
     as complete.cases na.omit packageVersion read.table str
    Consider adding
     importFrom("methods", "as")
     importFrom("stats", "complete.cases", "na.omit")
     importFrom("utils", "packageVersion", "read.table", "str")
    to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
    contains 'methods').
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    The following object is masked from ‘package:arm’:
    
     rescale
    
    dimids automatically generated
    dimids automatically generated
    omitting width because it is not replicated along MARGIN
    omitting temp because it is not replicated along MARGIN
    omitting depth because it is not replicated along MARGIN
    omitting velocity because it is not replicated along MARGIN
    omitting substrate because it is not replicated along MARGIN
    omitting habitat because it is not replicated along MARGIN
    omitting trophic because of the following error:
     Error in median.default(newX[, i], ...) : need numeric data
    
    omitting life.history because of the following error:
     Error in median.default(newX[, i], ...) : need numeric data
    
    omitting trophic because it is not replicated along MARGIN
    omitting life.history because it is not replicated along MARGIN
    
    Error: processing vignette ‘multitable.Rnw’ failed with diagnostics:
     chunk 57 (label = a faceted ggplot scatterplot from a data list)
    Error : Unknown parameters: family
    Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: multitable
    Loading required package: rbenchmark
    Loading required package: ggplot2
    Loading required package: arm
    Loading required package: MASS
    Loading required package: Matrix
    Loading required package: lme4
    
    arm (Version 1.8-6, built: 2015-7-7)
    
    Working directory is /data/gannet/ripley/R/packages/tests-clang/multitable.Rcheck/vign_test/multitable/vignettes
    
    Loading required package: vegan
    Loading required package: permute
    Loading required package: lattice
    This is vegan 2.3-3
    Loading required package: scales
    
    Attaching package: ‘scales’
    
    The following object is masked from ‘package:arm’:
    
     rescale
    
    dimids automatically generated
    dimids automatically generated
    omitting width because it is not replicated along MARGIN
    omitting temp because it is not replicated along MARGIN
    omitting depth because it is not replicated along MARGIN
    omitting velocity because it is not replicated along MARGIN
    omitting substrate because it is not replicated along MARGIN
    omitting habitat because it is not replicated along MARGIN
    omitting trophic because of the following error:
     Error in median.default(newX[, i], ...) : need numeric data
    
    omitting life.history because of the following error:
     Error in median.default(newX[, i], ...) : need numeric data
    
    omitting trophic because it is not replicated along MARGIN
    omitting life.history because it is not replicated along MARGIN
    
    Error: processing vignette 'multitable.Rnw' failed with diagnostics:
     chunk 57 (label = a faceted ggplot scatterplot from a data list)
    Error : Unknown parameters: family
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.6
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: multitable
    Loading required package: rbenchmark
    Loading required package: ggplot2
    Loading required package: arm
    Loading required package: MASS
    Loading required package: Matrix
    Loading required package: lme4
    
    arm (Version 1.8-6, built: 2015-7-7)
    
    Working directory is /data/gannet/ripley/R/packages/tests-devel/multitable.Rcheck/vign_test/multitable/vignettes
    
    Loading required package: vegan
    Loading required package: permute
    Loading required package: lattice
    This is vegan 2.3-3
    Loading required package: scales
    
    Attaching package: ‘scales’
    
    The following object is masked from ‘package:arm’:
    
     rescale
    
    dimids automatically generated
    dimids automatically generated
    omitting width because it is not replicated along MARGIN
    omitting temp because it is not replicated along MARGIN
    omitting depth because it is not replicated along MARGIN
    omitting velocity because it is not replicated along MARGIN
    omitting substrate because it is not replicated along MARGIN
    omitting habitat because it is not replicated along MARGIN
    omitting trophic because of the following error:
     Error in median.default(newX[, i], ...) : need numeric data
    
    omitting life.history because of the following error:
     Error in median.default(newX[, i], ...) : need numeric data
    
    omitting trophic because it is not replicated along MARGIN
    omitting life.history because it is not replicated along MARGIN
    
    Error: processing vignette 'multitable.Rnw' failed with diagnostics:
     chunk 57 (label = a faceted ggplot scatterplot from a data list)
    Error : Unknown parameters: family
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.6
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in ‘multitable.Rnw’
     ...
    > p <- p + geom_point(aes(x = width, y = abundance,
    + shape = life.history))
    
    > p <- p + stat_smooth(aes(x = width, y = abundance),
    + se = FALSE, method = "bayesglm", family = poisson, form = y ~
    + x + I(x^2), colo .... [TRUNCATED]
    
     When sourcing ‘multitable.R’:
    Error: Unknown parameters: family
    Execution halted
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    The following object is masked from ‘package:arm’:
    
     rescale
    
    dimids automatically generated
    dimids automatically generated
    omitting width because it is not replicated along MARGIN
    omitting temp because it is not replicated along MARGIN
    omitting depth because it is not replicated along MARGIN
    omitting velocity because it is not replicated along MARGIN
    omitting substrate because it is not replicated along MARGIN
    omitting habitat because it is not replicated along MARGIN
    omitting trophic because of the following error:
     Error in median.default(newX[, i], ...) : need numeric data
    
    omitting life.history because of the following error:
     Error in median.default(newX[, i], ...) : need numeric data
    
    omitting trophic because it is not replicated along MARGIN
    omitting life.history because it is not replicated along MARGIN
    
    Error: processing vignette ‘multitable.Rnw’ failed with diagnostics:
     chunk 57 (label = a faceted ggplot scatterplot from a data list)
    Error : Unknown parameters: family
    Execution halted
Flavors: r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64

Version: 1.6
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Warning in loop_apply(n, do.ply) : non-integer x = 2.236068
    Warning in loop_apply(n, do.ply) : non-integer x = 5.567764
    Warning in loop_apply(n, do.ply) : non-integer x = 2.236068
    Warning in loop_apply(n, do.ply) : non-integer x = 4.472136
    Warning in loop_apply(n, do.ply) : non-integer x = 4.472136
    Warning in loop_apply(n, do.ply) : non-integer x = 7.615773
    Warning in loop_apply(n, do.ply) : non-integer x = 14.560220
    Warning in loop_apply(n, do.ply) : non-integer x = 7.211103
    Warning in loop_apply(n, do.ply) : non-integer x = 1.414214
    Warning in loop_apply(n, do.ply) : non-integer x = 1.414214
    Warning in loop_apply(n, do.ply) : non-integer x = 2.828427
    Warning in loop_apply(n, do.ply) : non-integer x = 2.449490
    Warning in loop_apply(n, do.ply) : non-integer x = 3.741657
    Warning in loop_apply(n, do.ply) : non-integer x = 1.414214
    Warning in loop_apply(n, do.ply) : non-integer x = 2.645751
    Warning in loop_apply(n, do.ply) : non-integer x = 3.464102
    Warning in loop_apply(n, do.ply) : non-integer x = 1.414214
    Warning in loop_apply(n, do.ply) : non-integer x = 5.291503
    Warning in loop_apply(n, do.ply) : non-integer x = 2.449490
    
    Error: processing vignette 'multitable.Rnw' failed with diagnostics:
     chunk 58 (label = ggplot)
    Error in list_to_dataframe(res, attr(.data, "split_labels"), .id, id_as_factor) :
     Results must be all atomic, or all data frames
    Execution halted
Flavor: r-release-osx-x86_64-mavericks

Version: 1.6
Check: running R code from vignettes
Result: ERROR
    Errors in running code in vignettes:
    when running code in 'multitable.Rnw'
     ...
    > library("ggplot2")
    
    > library("arm")
    Loading required package: lme4
    Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
     namespace 'nlme' 3.1-122 is already loaded, but >= 3.1.123 is required
    
     When sourcing 'multitable.R':
    Error: package 'lme4' could not be loaded
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64