CRAN Package Check Results for Package muma

Last updated on 2015-04-27 10:48:51.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.4 4.51 43.40 47.91 NOTE
r-devel-linux-x86_64-debian-gcc 1.4 4.28 43.54 47.82 NOTE
r-devel-linux-x86_64-fedora-clang 1.4 100.88 NOTE
r-devel-linux-x86_64-fedora-gcc 1.4 92.27 NOTE
r-devel-osx-x86_64-clang 1.4 86.04 NOTE
r-devel-windows-ix86+x86_64 1.4 12.00 70.00 82.00 NOTE
r-patched-linux-x86_64 1.4 4.38 43.61 47.99 NOTE
r-patched-solaris-sparc 1.4 605.50 NOTE
r-patched-solaris-x86 1.4 133.40 NOTE
r-release-linux-x86_64 1.4 4.26 43.68 47.94 NOTE
r-release-osx-x86_64-mavericks 1.4 NOTE
r-release-osx-x86_64-snowleopard 1.4 ERROR
r-release-windows-ix86+x86_64 1.4 18.00 88.00 106.00 NOTE
r-oldrel-windows-ix86+x86_64 1.4 23.00 93.00 116.00 NOTE

Check Details

Version: 1.4
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     ‘car’ ‘pdist’ ‘pls’ ‘gplots’ ‘mvtnorm’ ‘robustbase’ ‘gtools’ ‘bitops’
     ‘caTools’ ‘pcaPP’ ‘rrcov’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4
Check: dependencies in R code
Result: NOTE
    'library' or 'require' calls to packages already attached by Depends:
     ‘car’ ‘gplots’ ‘pdist’ ‘pls’ ‘rrcov’
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     ‘bitops’ ‘caTools’ ‘car’ ‘gplots’ ‘gtools’ ‘mvtnorm’ ‘pcaPP’ ‘pdist’
     ‘pls’ ‘robustbase’ ‘rrcov’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4
Check: R code for possible problems
Result: NOTE
    Plot.pca.score: no visible global function definition for ‘dataEllipse’
    Plot.plsda: no visible global function definition for ‘dataEllipse’
    explore.data: no visible global function definition for ‘T2.test’
    oplsda: no visible global function definition for ‘dataEllipse’
    ostocsy: no visible global function definition for ‘colorpanel’
    outlier: no visible global function definition for ‘pdist’
    plsda: no visible global function definition for ‘plsr’
    stocsy: no visible global function definition for ‘colorpanel’
    stocsy.1d: no visible global function definition for ‘rich.colors’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.4
Check: Rd line widths
Result: NOTE
    Rd file 'Plot.pca.score.Rd':
     \examples lines wider than 100 characters:
     ylab = ylab, xlim = lim, ylim = lim, pch = 19, sub = paste("Cumulative Proportion of Variance Explained = ",
    
    Rd file 'oplsda.Rd':
     \examples lines wider than 100 characters:
     ylab = ylab, xlim = lim, ylim = lim, pch = 19, sub = paste("Cumulative Proportion of Variance Explained = ",
    
    Rd file 'univariate.Rd':
     \usage lines wider than 90 characters:
     univariate(file, imputation = FALSE, imput, normalize = TRUE, multi.test = TRUE, plot.volcano = FALSE, save.boxplot=TRUE)
    
    Rd file 'volcano.Rd':
     \examples lines wider than 100 characters:
     sep = ""), sub = "(Variables in Blue are significant (Pvalue<0.05) and showed Fold Changes >1.2 or <0.8)")
     j, sep = ""), sub = "(Variables in Blue are significant (Pvalue<0.05) and showed Fold Changes >1.2 or <0.8)")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.4
Check: package dependencies
Result: ERROR
    Package required but not available: ‘car’
    
    Depends: includes the non-default packages:
     ‘car’ ‘pdist’ ‘pls’ ‘gplots’ ‘mvtnorm’ ‘robustbase’ ‘gtools’ ‘bitops’
     ‘caTools’ ‘pcaPP’ ‘rrcov’
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64-snowleopard