CRAN Package Check Results for Package mutoss

Last updated on 2017-05-24 01:49:13.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-10 4.03 62.06 66.10 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-10 4.15 61.47 65.62 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-10 139.81 NOTE --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.1-10 137.83 NOTE --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.1-10 19.00 117.00 136.00 NOTE
r-patched-linux-x86_64 0.1-10 4.46 62.30 66.76 NOTE
r-patched-solaris-sparc 0.1-10 810.40 NOTE
r-patched-solaris-x86 0.1-10 191.40 NOTE
r-release-linux-x86_64 0.1-10 4.08 62.27 66.35 NOTE
r-release-windows-ix86+x86_64 0.1-10 11.00 155.00 166.00 NOTE
r-release-osx-x86_64 0.1-10 ERROR
r-oldrel-windows-ix86+x86_64 0.1-10 13.00 134.00 147.00 NOTE
r-oldrel-osx-x86_64 0.1-10 NOTE

Check Details

Version: 0.1-10
Check: R code for possible problems
Result: NOTE
    BH: no visible global function definition for ‘p.adjust’
    BY: no visible global function definition for ‘p.adjust’
    TSBKY_pi0_est: no visible global function definition for ‘p.adjust’
    adaptiveBH: no visible global function definition for ‘p.adjust’
    adaptiveSTS: no visible global function definition for ‘p.adjust’
    adjPValuesPlot: no visible global function definition for ‘plot’
    adjPValuesPlot: no visible global function definition for ‘abline’
    fisher22_fast: no visible global function definition for ‘runif’
    fisher23_fast: no visible global function definition for ‘runif’
    ftest.marginal : <anonymous>: no visible global function definition for
     ‘kruskal.test’
    ftest.marginal : <anonymous>: no visible global function definition for
     ‘anova’
    ftest.marginal : <anonymous>: no visible global function definition for
     ‘lm’
    gao: no visible global function definition for ‘model.frame’
    gao: no visible global function definition for ‘aggregate’
    gao: no visible global function definition for ‘pt’
    gao: no visible global function definition for ‘p.adjust’
    gao.wrapper: no visible global function definition for ‘formula’
    hochberg: no visible global function definition for ‘p.adjust’
    holm: no visible global function definition for ‘p.adjust’
    hommel: no visible global function definition for ‘p.adjust’
    mu.compare.adjusted: no visible global function definition for ‘plot’
    mu.compare.adjusted: no visible global function definition for ‘title’
    mu.compare.adjusted: no visible global function definition for ‘par’
    mu.compare.adjusted: no visible global function definition for ‘legend’
    mu.compare.adjusted: no visible global function definition for
     ‘identify’
    mu.compare.critical: no visible global function definition for ‘plot’
    mu.compare.critical: no visible global function definition for ‘title’
    mu.compare.critical: no visible global function definition for ‘par’
    mu.compare.critical: no visible global function definition for ‘legend’
    mu.compare.critical: no visible global function definition for
     ‘identify’
    mutoss.plotCI: no visible global function definition for ‘axis’
    nparcomp : probit: no visible global function definition for ‘qnorm’
    nparcomp: no visible global function definition for ‘model.frame’
    nparcomp: no visible global function definition for ‘qnorm’
    nparcomp: no visible global function definition for ‘pnorm’
    nparcomp: no visible global function definition for ‘pt’
    nparcomp: no visible global function definition for ‘plot’
    nparcomp: no visible global function definition for ‘abline’
    nparcomp: no visible global function definition for ‘axis’
    nparcomp: no visible global function definition for ‘points’
    nparcomp: no visible global function definition for ‘polygon’
    nparcomp: no visible global function definition for ‘box’
    nparcomp: no visible global function definition for ‘title’
    nparcomp.wrapper: no visible global function definition for ‘formula’
    onesamp.marginal : <anonymous>: no visible global function definition
     for ‘wilcox.test’
    onesamp.marginal : <anonymous>: no visible global function definition
     for ‘t.test’
    oracleBH: no visible global function definition for ‘p.adjust’
    pValuesPlot: no visible global function definition for ‘plot’
    pValuesPlot: no visible global function definition for ‘ecdf’
    pValuesPlot: no visible global function definition for ‘abline’
    paired.marginal : <anonymous>: no visible global function definition
     for ‘wilcox.test’
    paired.marginal : <anonymous>: no visible global function definition
     for ‘t.test’
    regwq: no visible global function definition for ‘model.frame’
    regwq: no visible global function definition for ‘ptukey’
    regwq: no visible global function definition for ‘qtukey’
    requireLibrary: no visible global function definition for
     ‘install.packages’
    snk: no visible global function definition for ‘model.frame’
    snk: no visible global function definition for ‘qtukey’
    snk: no visible global function definition for ‘ptukey’
    snk.wrapper: no visible global function definition for ‘formula’
    tukey.wrapper: no visible global function definition for ‘aov’
    tukey.wrapper: no visible global function definition for ‘TukeyHSD’
    twosamp.marginal : <anonymous>: no visible global function definition
     for ‘wilcox.test’
    twosamp.marginal : <anonymous>: no visible global function definition
     for ‘t.test’
    twostageBR: no visible global function definition for ‘p.adjust’
    Undefined global functions or variables:
     TukeyHSD abline aggregate anova aov axis box ecdf formula identify
     install.packages kruskal.test legend lm model.frame p.adjust par plot
     pnorm points polygon pt ptukey qnorm qtukey runif t.test title
     wilcox.test
    Consider adding
     importFrom("graphics", "abline", "axis", "box", "identify", "legend",
     "par", "plot", "points", "polygon", "title")
     importFrom("stats", "TukeyHSD", "aggregate", "anova", "aov", "ecdf",
     "formula", "kruskal.test", "lm", "model.frame", "p.adjust",
     "pnorm", "pt", "ptukey", "qnorm", "qtukey", "runif",
     "t.test", "wilcox.test")
     importFrom("utils", "install.packages")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1-10
Flags: --no-stop-on-test-error
Check: R code for possible problems
Result: NOTE
    BH: no visible global function definition for ‘p.adjust’
    BY: no visible global function definition for ‘p.adjust’
    TSBKY_pi0_est: no visible global function definition for ‘p.adjust’
    adaptiveBH: no visible global function definition for ‘p.adjust’
    adaptiveSTS: no visible global function definition for ‘p.adjust’
    adjPValuesPlot: no visible global function definition for ‘plot’
    adjPValuesPlot: no visible global function definition for ‘abline’
    fisher22_fast: no visible global function definition for ‘runif’
    fisher23_fast: no visible global function definition for ‘runif’
    ftest.marginal : <anonymous>: no visible global function definition for
     ‘kruskal.test’
    ftest.marginal : <anonymous>: no visible global function definition for
     ‘anova’
    ftest.marginal : <anonymous>: no visible global function definition for
     ‘lm’
    gao: no visible global function definition for ‘model.frame’
    gao: no visible global function definition for ‘aggregate’
    gao: no visible global function definition for ‘pt’
    gao: no visible global function definition for ‘p.adjust’
    gao.wrapper: no visible global function definition for ‘formula’
    hochberg: no visible global function definition for ‘p.adjust’
    holm: no visible global function definition for ‘p.adjust’
    hommel: no visible global function definition for ‘p.adjust’
    mu.compare.adjusted: no visible global function definition for ‘plot’
    mu.compare.adjusted: no visible global function definition for ‘title’
    mu.compare.adjusted: no visible global function definition for ‘par’
    mu.compare.adjusted: no visible global function definition for ‘legend’
    mu.compare.adjusted: no visible global function definition for
     ‘identify’
    mu.compare.critical: no visible global function definition for ‘plot’
    mu.compare.critical: no visible global function definition for ‘title’
    mu.compare.critical: no visible global function definition for ‘par’
    mu.compare.critical: no visible global function definition for ‘legend’
    mu.compare.critical: no visible global function definition for
     ‘identify’
    mutoss.plotCI: no visible global function definition for ‘axis’
    nparcomp : probit: no visible global function definition for ‘qnorm’
    nparcomp: no visible global function definition for ‘model.frame’
    nparcomp: no visible global function definition for ‘qnorm’
    nparcomp: no visible global function definition for ‘pnorm’
    nparcomp: no visible global function definition for ‘pt’
    nparcomp: no visible global function definition for ‘plot’
    nparcomp: no visible global function definition for ‘abline’
    nparcomp: no visible global function definition for ‘axis’
    nparcomp: no visible global function definition for ‘points’
    nparcomp: no visible global function definition for ‘polygon’
    nparcomp: no visible global function definition for ‘box’
    nparcomp: no visible global function definition for ‘title’
    nparcomp.wrapper: no visible global function definition for ‘formula’
    onesamp.marginal : <anonymous>: no visible global function definition
     for ‘wilcox.test’
    onesamp.marginal : <anonymous>: no visible global function definition
     for ‘t.test’
    oracleBH: no visible global function definition for ‘p.adjust’
    pValuesPlot: no visible global function definition for ‘plot’
    pValuesPlot: no visible global function definition for ‘ecdf’
    pValuesPlot: no visible global function definition for ‘abline’
    paired.marginal : <anonymous>: no visible global function definition
     for ‘wilcox.test’
    paired.marginal : <anonymous>: no visible global function definition
     for ‘t.test’
    regwq: no visible global function definition for ‘model.frame’
    regwq: no visible global function definition for ‘ptukey’
    regwq: no visible global function definition for ‘qtukey’
    requireLibrary: no visible global function definition for
     ‘install.packages’
    snk: no visible global function definition for ‘model.frame’
    snk: no visible global function definition for ‘qtukey’
    snk: no visible global function definition for ‘ptukey’
    snk.wrapper: no visible global function definition for ‘formula’
    tukey.wrapper: no visible global function definition for ‘aov’
    tukey.wrapper: no visible global function definition for ‘TukeyHSD’
    twosamp.marginal : <anonymous>: no visible global function definition
     for ‘wilcox.test’
    twosamp.marginal : <anonymous>: no visible global function definition
     for ‘t.test’
    twostageBR: no visible global function definition for ‘p.adjust’
    Undefined global functions or variables:
     TukeyHSD abline aggregate anova aov axis box ecdf formula identify
     install.packages kruskal.test legend lm model.frame p.adjust par plot
     pnorm points polygon pt ptukey qnorm qtukey runif t.test title
     wilcox.test
    Consider adding
     importFrom("graphics", "abline", "axis", "box", "identify", "legend",
     "par", "plot", "points", "polygon", "title")
     importFrom("stats", "TukeyHSD", "aggregate", "anova", "aov", "ecdf",
     "formula", "kruskal.test", "lm", "model.frame", "p.adjust",
     "pnorm", "pt", "ptukey", "qnorm", "qtukey", "runif",
     "t.test", "wilcox.test")
     importFrom("utils", "install.packages")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1-10
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘qvalue’
Flavor: r-release-osx-x86_64

Version: 0.1-10
Check: examples
Result: ERROR
    Running examples in ‘mutoss-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: Qvalue
    > ### Title: Storey's (2001) q-value Procedure...
    > ### Aliases: Qvalue
    >
    > ### ** Examples
    > pval <- c(runif(50), runif(50, 0, 0.01))
    > result <- Qvalue(pval)
    Loading required package: qvalue
    Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
     there is no package called ‘qvalue’
    Package qvalue is required - should we install it?
    Error in requireLibrary("qvalue") :
     Required package qvalue should not be installed
    Calls: Qvalue -> requireLibrary
    Execution halted
Flavor: r-release-osx-x86_64