CRAN Package Check Results for Package mvabund

Last updated on 2015-09-05 17:48:05.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.10.4 20.85 79.39 100.24 NOTE
r-devel-linux-x86_64-debian-gcc 3.10.4 25.95 78.16 104.12 NOTE
r-devel-linux-x86_64-fedora-clang 3.10.4 199.17 NOTE
r-devel-linux-x86_64-fedora-gcc 3.10.4 194.90 NOTE
r-devel-osx-x86_64-clang 3.10.4 147.43 OK
r-devel-windows-ix86+x86_64 3.10.4 142.00 187.00 329.00 NOTE
r-patched-linux-x86_64 3.10.4 26.75 79.11 105.86 OK
r-patched-solaris-sparc 3.10.4 1429.10 OK
r-patched-solaris-x86 3.10.4 266.30 OK
r-release-linux-x86_64 3.10.4 25.80 78.43 104.22 OK
r-release-osx-x86_64-mavericks 3.10.4 OK
r-release-windows-ix86+x86_64 3.10.4 128.00 242.00 370.00 OK
r-oldrel-windows-ix86+x86_64 3.10.4 140.00 219.00 359.00 OK

Check Details

Version: 3.10.4
Check: R code for possible problems
Result: NOTE
    RcppVersion: no visible global function definition for
     ‘installed.packages’
    absspp: no visible global function definition for ‘var’
    anova.manyany: no visible global function definition for ‘logLik’
    anova.manyglm : <anonymous>: no visible global function definition for
     ‘formula’
    anova.manylm : <anonymous>: no visible global function definition for
     ‘formula’
    as.mvformula: no visible global function definition for ‘as.formula’
    as.mvformula: no visible global function definition for ‘terms’
    as.mvformula: no visible global function definition for ‘model.frame’
    best.r.sq: no visible global function definition for ‘terms’
    best.r.sq: no visible global function definition for ‘reformulate’
    best.r.sq: no visible global function definition for ‘update’
    betaest: no visible global function definition for ‘poisson’
    case.names.manyglm: no visible global function definition for ‘weights’
    case.names.manyglm: no visible global function definition for
     ‘residuals’
    case.names.manylm: no visible global function definition for ‘weights’
    case.names.manylm: no visible global function definition for
     ‘residuals’
    cooks.distance.manylm: no visible global function definition for
     ‘residuals’
    cooks.distance.manylm: no visible global function definition for
     ‘deviance’
    cooks.distance.manylm: no visible global function definition for
     ‘df.residual’
    covratio.manylm: no visible global function definition for
     ‘weighted.residuals’
    cv.glm1path: no visible global function definition for ‘flush.console’
    cv.glm1path: no visible binding for global variable ‘sd’
    default.boxplot.mvformula: no visible global function definition for
     ‘terms’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘dev.list’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘postscript’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘pdf’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘jpeg’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘bmp’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘png’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘dev.off’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘var’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘lm’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘dev.list’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘terms’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘model.response’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘model.frame’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘var’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘palette’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘rainbow’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘postscript’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘pdf’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘jpeg’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘bmp’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘png’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘dev.off’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘lm’
    default.plot.manyglm: no visible global function definition for
     ‘dev.list’
    default.plot.manyglm: no visible global function definition for
     ‘postscript’
    default.plot.manyglm: no visible global function definition for ‘pdf’
    default.plot.manyglm: no visible global function definition for ‘jpeg’
    default.plot.manyglm: no visible global function definition for ‘bmp’
    default.plot.manyglm: no visible global function definition for ‘png’
    default.plot.manyglm: no visible global function definition for
     ‘dev.off’
    default.plot.manyglm: no visible global function definition for
     ‘residuals’
    default.plot.manyglm: no visible global function definition for
     ‘rainbow’
    default.plot.manyglm: no visible global function definition for
     ‘df.residual’
    default.plot.manyglm: no visible global function definition for
     ‘dev.interactive’
    default.plot.manylm: no visible global function definition for
     ‘residuals’
    default.plot.manylm: no visible global function definition for
     ‘dev.list’
    default.plot.manylm: no visible global function definition for
     ‘postscript’
    default.plot.manylm: no visible global function definition for ‘pdf’
    default.plot.manylm: no visible global function definition for ‘jpeg’
    default.plot.manylm: no visible global function definition for ‘bmp’
    default.plot.manylm: no visible global function definition for ‘png’
    default.plot.manylm: no visible global function definition for
     ‘dev.off’
    default.plot.manylm: no visible global function definition for
     ‘predict’
    default.plot.manylm: no visible global function definition for
     ‘weights’
    default.plot.manylm: no visible global function definition for
     ‘rainbow’
    default.plot.manylm: no visible global function definition for
     ‘df.residual’
    default.plot.manylm: no visible global function definition for
     ‘na.omit’
    default.plot.manylm: no visible global function definition for
     ‘weighted.residuals’
    default.plot.manylm: no visible global function definition for
     ‘deviance’
    default.plot.manylm: no visible global function definition for
     ‘dev.interactive’
    default.plot.mvabund: no visible global function definition for
     ‘dev.list’
    default.plot.mvabund: no visible global function definition for
     ‘as.formula’
    default.plot.mvabund: no visible global function definition for
     ‘update’
    default.plot.mvabund: no visible global function definition for
     ‘postscript’
    default.plot.mvabund: no visible global function definition for ‘pdf’
    default.plot.mvabund: no visible global function definition for ‘jpeg’
    default.plot.mvabund: no visible global function definition for ‘bmp’
    default.plot.mvabund: no visible global function definition for ‘png’
    default.plot.mvabund: no visible global function definition for
     ‘dev.cur’
    default.plot.mvabund: no visible global function definition for
     ‘dev.off’
    default.plot.mvabund: no visible global function definition for
     ‘dev.set’
    default.plot.mvformula: no visible global function definition for
     ‘dev.list’
    default.plot.mvformula: no visible global function definition for
     ‘as.formula’
    default.plot.mvformula: no visible global function definition for
     ‘terms’
    default.plot.mvformula: no visible global function definition for
     ‘model.response’
    default.plot.mvformula: no visible global function definition for
     ‘model.frame’
    default.plot.mvformula: no visible global function definition for
     ‘postscript’
    default.plot.mvformula: no visible global function definition for ‘pdf’
    default.plot.mvformula: no visible global function definition for
     ‘jpeg’
    default.plot.mvformula: no visible global function definition for ‘bmp’
    default.plot.mvformula: no visible global function definition for
     ‘dev.cur’
    default.plot.mvformula: no visible global function definition for
     ‘dev.off’
    default.plot.mvformula: no visible global function definition for
     ‘dev.set’
    default.plotMvaFactor: no visible global function definition for
     ‘dev.list’
    default.plotMvaFactor: no visible global function definition for
     ‘postscript’
    default.plotMvaFactor: no visible global function definition for ‘pdf’
    default.plotMvaFactor: no visible global function definition for ‘jpeg’
    default.plotMvaFactor: no visible global function definition for ‘bmp’
    default.plotMvaFactor: no visible global function definition for ‘png’
    default.plotMvaFactor: no visible global function definition for
     ‘dev.cur’
    default.plotMvaFactor: no visible global function definition for
     ‘dev.off’
    default.plotMvaFactor: no visible global function definition for
     ‘dev.set’
    default.plotMvaFactor: no visible global function definition for
     ‘rainbow’
    default.print.anova.manyglm: no visible global function definition for
     ‘printCoefmat’
    default.print.summary.manyglm: no visible global function definition
     for ‘symnum’
    default.print.summary.manyglm: no visible binding for global variable
     ‘quantile’
    default.print.summary.manyglm: no visible global function definition
     for ‘quantile’
    deviance.manylm: no visible global function definition for ‘na.fail’
    deviance.manylm: no visible global function definition for ‘na.omit’
    deviance.manylm: no visible global function definition for ‘na.exclude’
    dfbeta.manyglm: no visible global function definition for
     ‘variable.names’
    dfbeta.manylm: no visible global function definition for
     ‘variable.names’
    dfbetas.manylm: no visible global function definition for ‘dfbeta’
    dffits.manylm: no visible global function definition for
     ‘weighted.residuals’
    effic.make.link : mu.eta.fct: no visible global function definition for
     ‘dnorm’
    effic.make.link : linkinv.fct: no visible global function definition
     for ‘qnorm’
    effic.make.link : linkinv.fct: no visible global function definition
     for ‘pnorm’
    effic.make.link : mu.eta.fct: no visible global function definition for
     ‘dcauchy’
    effic.make.link : linkinv.fct: no visible global function definition
     for ‘qcauchy’
    effic.make.link : linkinv.fct: no visible global function definition
     for ‘pcauchy’
    effic.make.link: no visible global function definition for ‘make.link’
    extend.x.formula: no visible global function definition for ‘terms’
    extend.x.formula: no visible global function definition for
     ‘reformulate’
    extend.x.formula: no visible global function definition for ‘update’
    extractAIC.manyglm: no visible global function definition for ‘logLik’
    formulaMva: no visible global function definition for ‘terms’
    formulaMva: no visible global function definition for ‘model.frame’
    formulaUnimva: no visible global function definition for ‘update’
    formulaUnimva: no visible global function definition for ‘terms’
    formulaUnimva: no visible global function definition for ‘as.formula’
    get.design: no visible global function definition for ‘as.formula’
    get.design: no visible global function definition for ‘model.matrix’
    get.design: no visible global function definition for ‘contrasts’
    get.design: no visible global function definition for ‘terms’
    get.polys: no visible global function definition for ‘contrasts’
    get.polys: no visible global function definition for ‘contrasts<-’
    get.polys: no visible global function definition for ‘poly’
    make.vslink: no visible global function definition for ‘make.link’
    manyany: no visible global function definition for ‘binomial’
    manyany: no visible global function definition for ‘logLik’
    manyany: no visible global function definition for ‘deviance’
    manyany: no visible global function definition for ‘fitted’
    manyany: no visible global function definition for ‘predict’
    manyany: no visible global function definition for ‘coef’
    manyany: no visible global function definition for ‘model.frame’
    manyany: no visible global function definition for ‘terms’
    manyglm: no visible global function definition for ‘model.offset’
    manyglm: no visible global function definition for ‘model.response’
    manyglm: no visible global function definition for ‘model.matrix’
    manyglm: no visible global function definition for ‘.getXlevels’
    manylm: no visible global function definition for ‘model.response’
    manylm: no visible global function definition for ‘model.weights’
    manylm: no visible global function definition for ‘model.offset’
    manylm: no visible global function definition for ‘is.empty.model’
    manylm: no visible global function definition for ‘model.matrix’
    manylm: no visible global function definition for ‘.getXlevels’
    manylm.fit: no visible binding for global variable ‘data’
    manylm.influence: no visible global function definition for
     ‘weighted.residuals’
    manylm.influence.measures : is.influential: no visible global function
     definition for ‘pf’
    manylm.influence.measures: no visible global function definition for
     ‘weighted.residuals’
    manylm.influence.measures: no visible global function definition for
     ‘df.residual’
    manylm.influence.measures: no visible global function definition for
     ‘variable.names’
    mu.update: no visible global function definition for ‘poisson’
    mvformula: no visible global function definition for ‘formula’
    mvformula: no visible global function definition for ‘terms’
    plot.glm1path: no visible global function definition for ‘loess.smooth’
    plot.manyany: no visible global function definition for ‘qnorm’
    plot.manyany: no visible global function definition for ‘rainbow’
    plotFormulafeature: no visible global function definition for
     ‘model.matrix’
    plotFormulafeature: no visible global function definition for
     ‘model.frame’
    plotFormulafeature: no visible global function definition for ‘terms’
    predict.manyglm: no visible binding for global variable ‘na.pass’
    predict.manyglm: no visible global function definition for ‘formula’
    predict.manyglm: no visible global function definition for ‘binomial’
    predict.manyglm: no visible global function definition for ‘poisson’
    predict.manyglm: no visible global function definition for ‘gaussian’
    predict.manyglm: no visible global function definition for
     ‘model.frame’
    predict.manyglm: no visible global function definition for ‘as.formula’
    predict.manyglm: no visible global function definition for ‘glm’
    predict.manyglm: no visible global function definition for
     ‘predict.glm’
    predict.manylm: no visible binding for global variable ‘na.pass’
    predict.manylm: no visible global function definition for ‘formula’
    predict.manylm: no visible global function definition for ‘as.formula’
    predict.manylm: no visible global function definition for ‘model.frame’
    predict.manylm: no visible global function definition for ‘lm’
    predict.manylm: no visible global function definition for ‘predict.lm’
    predict.traitglm: no visible global function definition for ‘coef’
    print.anova.manyany: no visible global function definition for
     ‘printCoefmat’
    print.anova.manylm: no visible global function definition for
     ‘printCoefmat’
    print.manyany: no visible global function definition for ‘qnorm’
    print.manyglm: no visible global function definition for ‘coef’
    print.manyglm: no visible global function definition for ‘naprint’
    print.manylm: no visible global function definition for ‘coef’
    print.manylm: no visible global function definition for ‘naprint’
    print.summary.manylm: no visible global function definition for
     ‘symnum’
    print.summary.manylm: no visible binding for global variable ‘quantile’
    print.summary.manylm: no visible global function definition for
     ‘quantile’
    quasibinomialMany: no visible global function definition for
     ‘make.link’
    quasipoisson: no visible global function definition for ‘make.link’
    rcalc: no visible global function definition for ‘var’
    residuals.glm1path: no visible global function definition for ‘runif’
    residuals.glm1path: no visible global function definition for ‘qnorm’
    residuals.manyany: no visible global function definition for ‘runif’
    residuals.manyglm: no visible global function definition for ‘coef’
    residuals.manyglm: no visible global function definition for ‘runif’
    residuals.manyglm: no visible global function definition for ‘qnorm’
    ridgeParamEst: no visible global function definition for ‘runif’
    ridgeParamEst: no visible global function definition for ‘cov’
    rstandard.manylm: no visible global function definition for ‘deviance’
    rstandard.manylm: no visible global function definition for
     ‘df.residual’
    rstandard.manylm: no visible global function definition for
     ‘weighted.residuals’
    shiftpoints: no visible global function definition for ‘na.omit’
    traitglm: no visible global function definition for ‘coef’
    transAxis: no visible global function definition for ‘terms’
    transAxis: no visible global function definition for ‘dev.off’
    weighted.residuals.manylm: no visible global function definition for
     ‘weights’
    weighted.residuals.manylm: no visible global function definition for
     ‘residuals’
    weights.manyglm: no visible global function definition for ‘naresid’
    Undefined global functions or variables:
     .getXlevels as.formula binomial bmp coef contrasts contrasts<- cov
     data dcauchy dev.cur dev.interactive dev.list dev.off dev.set
     deviance df.residual dfbeta dnorm fitted flush.console formula
     gaussian glm installed.packages is.empty.model jpeg lm loess.smooth
     logLik make.link model.frame model.matrix model.offset model.response
     model.weights na.exclude na.fail na.omit na.pass naprint naresid
     palette pcauchy pdf pf png pnorm poisson poly postscript predict
     predict.glm predict.lm printCoefmat qcauchy qnorm quantile rainbow
     reformulate residuals runif sd symnum terms update var variable.names
     weighted.residuals weights
    Consider adding
     importFrom("grDevices", "bmp", "dev.cur", "dev.interactive",
     "dev.list", "dev.off", "dev.set", "jpeg", "palette", "pdf",
     "png", "postscript", "rainbow")
     importFrom("stats", ".getXlevels", "as.formula", "binomial", "coef",
     "contrasts", "contrasts<-", "cov", "dcauchy", "deviance",
     "df.residual", "dfbeta", "dnorm", "fitted", "formula",
     "gaussian", "glm", "is.empty.model", "lm", "loess.smooth",
     "logLik", "make.link", "model.frame", "model.matrix",
     "model.offset", "model.response", "model.weights",
     "na.exclude", "na.fail", "na.omit", "na.pass", "naprint",
     "naresid", "pcauchy", "pf", "pnorm", "poisson", "poly",
     "predict", "predict.glm", "predict.lm", "printCoefmat",
     "qcauchy", "qnorm", "quantile", "reformulate", "residuals",
     "runif", "sd", "symnum", "terms", "update", "var",
     "variable.names", "weighted.residuals", "weights")
     importFrom("utils", "data", "flush.console", "installed.packages")
    to your NAMESPACE.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64