CRAN Package Check Results for Package mvabund

Last updated on 2015-07-01 06:48:43.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.10.4 21.37 76.31 97.68 NOTE
r-devel-linux-x86_64-debian-gcc 3.10.4 27.29 77.56 104.86 NOTE
r-devel-linux-x86_64-fedora-clang 3.10.4 197.87 NOTE
r-devel-linux-x86_64-fedora-gcc 3.10.4 190.69 NOTE
r-devel-osx-x86_64-clang 3.10.4 172.15 OK
r-devel-windows-ix86+x86_64 3.10.4 148.00 182.00 330.00 NOTE
r-patched-linux-x86_64 3.10.4 27.03 76.77 103.80 OK
r-patched-solaris-sparc 3.10.4 1576.50 OK
r-patched-solaris-x86 3.10.4 266.00 OK
r-release-linux-x86_64 3.10.4 27.40 79.50 106.90 OK
r-release-osx-x86_64-mavericks 3.10.4 OK
r-release-windows-ix86+x86_64 3.10.4 105.00 191.00 296.00 OK
r-oldrel-windows-ix86+x86_64 3.10.4 159.00 191.00 350.00 OK

Check Details

Version: 3.10.4
Check: R code for possible problems
Result: NOTE
    RcppVersion: no visible global function definition for
     ‘installed.packages’
    absspp: no visible global function definition for ‘var’
    anova.manyany: no visible global function definition for ‘logLik’
    anova.manyglm : <anonymous>: no visible global function definition for
     ‘formula’
    anova.manylm : <anonymous>: no visible global function definition for
     ‘formula’
    as.mvformula: no visible global function definition for ‘as.formula’
    as.mvformula: no visible global function definition for ‘terms’
    as.mvformula: no visible global function definition for ‘model.frame’
    best.r.sq: no visible global function definition for ‘terms’
    best.r.sq: no visible global function definition for ‘reformulate’
    best.r.sq: no visible global function definition for ‘update’
    betaest: Error while checking: invalid ‘envir’ argument
    case.names.manyglm: no visible global function definition for ‘weights’
    case.names.manyglm: no visible global function definition for
     ‘residuals’
    case.names.manylm: no visible global function definition for ‘weights’
    case.names.manylm: no visible global function definition for
     ‘residuals’
    cooks.distance.manylm: no visible global function definition for
     ‘residuals’
    cooks.distance.manylm: no visible global function definition for
     ‘deviance’
    cooks.distance.manylm: no visible global function definition for
     ‘df.residual’
    covratio.manylm: no visible global function definition for
     ‘weighted.residuals’
    cv.glm1path: no visible global function definition for ‘flush.console’
    cv.glm1path: no visible binding for global variable ‘sd’
    default.boxplot.mvformula: no visible global function definition for
     ‘terms’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘dev.list’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘postscript’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘pdf’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘jpeg’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘bmp’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘png’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘dev.off’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘var’
    default.meanvar.plot.mvabund: no visible global function definition for
     ‘lm’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘dev.list’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘terms’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘model.response’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘model.frame’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘var’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘palette’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘rainbow’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘postscript’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘pdf’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘jpeg’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘bmp’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘png’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘dev.off’
    default.meanvar.plot.mvformula: no visible global function definition
     for ‘lm’
    default.plot.manyglm: no visible global function definition for
     ‘dev.list’
    default.plot.manyglm: no visible global function definition for
     ‘postscript’
    default.plot.manyglm: no visible global function definition for ‘pdf’
    default.plot.manyglm: no visible global function definition for ‘jpeg’
    default.plot.manyglm: no visible global function definition for ‘bmp’
    default.plot.manyglm: no visible global function definition for ‘png’
    default.plot.manyglm: no visible global function definition for
     ‘dev.off’
    default.plot.manyglm: no visible global function definition for
     ‘residuals’
    default.plot.manyglm: no visible global function definition for
     ‘rainbow’
    default.plot.manyglm: no visible global function definition for
     ‘df.residual’
    default.plot.manyglm: no visible global function definition for
     ‘dev.interactive’
    default.plot.manylm: no visible global function definition for
     ‘residuals’
    default.plot.manylm: no visible global function definition for
     ‘dev.list’
    default.plot.manylm: no visible global function definition for
     ‘postscript’
    default.plot.manylm: no visible global function definition for ‘pdf’
    default.plot.manylm: no visible global function definition for ‘jpeg’
    default.plot.manylm: no visible global function definition for ‘bmp’
    default.plot.manylm: no visible global function definition for ‘png’
    default.plot.manylm: no visible global function definition for
     ‘dev.off’
    default.plot.manylm: no visible global function definition for
     ‘predict’
    default.plot.manylm: no visible global function definition for
     ‘weights’
    default.plot.manylm: no visible global function definition for
     ‘rainbow’
    default.plot.manylm: no visible global function definition for
     ‘df.residual’
    default.plot.manylm: no visible global function definition for
     ‘na.omit’
    default.plot.manylm: no visible global function definition for
     ‘weighted.residuals’
    default.plot.manylm: no visible global function definition for
     ‘deviance’
    default.plot.manylm: no visible global function definition for
     ‘dev.interactive’
    default.plot.mvabund: no visible global function definition for
     ‘dev.list’
    default.plot.mvabund: no visible global function definition for
     ‘as.formula’
    default.plot.mvabund: no visible global function definition for
     ‘update’
    default.plot.mvabund: no visible global function definition for
     ‘postscript’
    default.plot.mvabund: no visible global function definition for ‘pdf’
    default.plot.mvabund: no visible global function definition for ‘jpeg’
    default.plot.mvabund: no visible global function definition for ‘bmp’
    default.plot.mvabund: no visible global function definition for ‘png’
    default.plot.mvabund: no visible global function definition for
     ‘dev.cur’
    default.plot.mvabund: no visible global function definition for
     ‘dev.off’
    default.plot.mvabund: no visible global function definition for
     ‘dev.set’
    default.plot.mvformula: no visible global function definition for
     ‘dev.list’
    default.plot.mvformula: no visible global function definition for
     ‘as.formula’
    default.plot.mvformula: no visible global function definition for
     ‘terms’
    default.plot.mvformula: no visible global function definition for
     ‘model.response’
    default.plot.mvformula: no visible global function definition for
     ‘model.frame’
    default.plot.mvformula: no visible global function definition for
     ‘postscript’
    default.plot.mvformula: no visible global function definition for ‘pdf’
    default.plot.mvformula: no visible global function definition for
     ‘jpeg’
    default.plot.mvformula: no visible global function definition for ‘bmp’
    default.plot.mvformula: no visible global function definition for
     ‘dev.cur’
    default.plot.mvformula: no visible global function definition for
     ‘dev.off’
    default.plot.mvformula: no visible global function definition for
     ‘dev.set’
    default.plotMvaFactor: no visible global function definition for
     ‘dev.list’
    default.plotMvaFactor: no visible global function definition for
     ‘postscript’
    default.plotMvaFactor: no visible global function definition for ‘pdf’
    default.plotMvaFactor: no visible global function definition for ‘jpeg’
    default.plotMvaFactor: no visible global function definition for ‘bmp’
    default.plotMvaFactor: no visible global function definition for ‘png’
    default.plotMvaFactor: no visible global function definition for
     ‘dev.cur’
    default.plotMvaFactor: no visible global function definition for
     ‘dev.off’
    default.plotMvaFactor: no visible global function definition for
     ‘dev.set’
    default.plotMvaFactor: no visible global function definition for
     ‘rainbow’
    default.print.anova.manyglm: no visible global function definition for
     ‘printCoefmat’
    default.print.summary.manyglm: no visible global function definition
     for ‘symnum’
    default.print.summary.manyglm: no visible binding for global variable
     ‘quantile’
    default.print.summary.manyglm: no visible global function definition
     for ‘quantile’
    deviance.manylm: no visible global function definition for ‘na.fail’
    deviance.manylm: no visible global function definition for ‘na.omit’
    deviance.manylm: no visible global function definition for ‘na.exclude’
    dfbeta.manyglm: no visible global function definition for
     ‘variable.names’
    dfbeta.manylm: no visible global function definition for
     ‘variable.names’
    dfbetas.manylm: no visible global function definition for ‘dfbeta’
    dffits.manylm: no visible global function definition for
     ‘weighted.residuals’
    effic.make.link : mu.eta.fct: no visible global function definition for
     ‘dnorm’
    effic.make.link : linkinv.fct: no visible global function definition
     for ‘qnorm’
    effic.make.link : linkinv.fct: no visible global function definition
     for ‘pnorm’
    effic.make.link : mu.eta.fct: no visible global function definition for
     ‘dcauchy’
    effic.make.link : linkinv.fct: no visible global function definition
     for ‘qcauchy’
    effic.make.link : linkinv.fct: no visible global function definition
     for ‘pcauchy’
    effic.make.link: no visible global function definition for ‘make.link’
    extend.x.formula: no visible global function definition for ‘terms’
    extend.x.formula: no visible global function definition for
     ‘reformulate’
    extend.x.formula: no visible global function definition for ‘update’
    extractAIC.manyglm: no visible global function definition for ‘logLik’
    formulaMva: no visible global function definition for ‘terms’
    formulaMva: no visible global function definition for ‘model.frame’
    formulaUnimva: no visible global function definition for ‘update’
    formulaUnimva: no visible global function definition for ‘terms’
    formulaUnimva: no visible global function definition for ‘as.formula’
    get.design: no visible global function definition for ‘as.formula’
    get.design: no visible global function definition for ‘model.matrix’
    get.design: no visible global function definition for ‘contrasts’
    get.design: no visible global function definition for ‘terms’
    get.polys: no visible global function definition for ‘contrasts’
    get.polys: no visible global function definition for ‘contrasts<-’
    get.polys: no visible global function definition for ‘poly’
    make.vslink: no visible global function definition for ‘make.link’
    manyany: Error while checking: invalid ‘envir’ argument
    manyglm: no visible global function definition for ‘model.offset’
    manyglm: no visible global function definition for ‘model.response’
    manyglm: no visible global function definition for ‘model.matrix’
    manyglm: no visible global function definition for ‘.getXlevels’
    manylm: no visible global function definition for ‘model.response’
    manylm: no visible global function definition for ‘model.weights’
    manylm: no visible global function definition for ‘model.offset’
    manylm: no visible global function definition for ‘is.empty.model’
    manylm: no visible global function definition for ‘model.matrix’
    manylm: no visible global function definition for ‘.getXlevels’
    manylm.fit: no visible binding for global variable ‘data’
    manylm.influence: no visible global function definition for
     ‘weighted.residuals’
    manylm.influence.measures : is.influential: no visible global function
     definition for ‘pf’
    manylm.influence.measures: no visible global function definition for
     ‘weighted.residuals’
    manylm.influence.measures: no visible global function definition for
     ‘df.residual’
    manylm.influence.measures: no visible global function definition for
     ‘variable.names’
    mu.update: Error while checking: invalid ‘envir’ argument
    mvformula: no visible global function definition for ‘formula’
    mvformula: no visible global function definition for ‘terms’
    plot.glm1path: no visible global function definition for ‘loess.smooth’
    plot.manyany: no visible global function definition for ‘qnorm’
    plot.manyany: no visible global function definition for ‘rainbow’
    plotFormulafeature: no visible global function definition for
     ‘model.matrix’
    plotFormulafeature: no visible global function definition for
     ‘model.frame’
    plotFormulafeature: no visible global function definition for ‘terms’
    predict.manyglm: no visible binding for global variable ‘na.pass’
    predict.manyglm: no visible global function definition for ‘formula’
    predict.manyglm: Error while checking: invalid ‘envir’ argument
    predict.manylm: no visible binding for global variable ‘na.pass’
    predict.manylm: no visible global function definition for ‘formula’
    predict.manylm: no visible global function definition for ‘as.formula’
    predict.manylm: no visible global function definition for ‘model.frame’
    predict.manylm: no visible global function definition for ‘lm’
    predict.manylm: no visible global function definition for ‘predict.lm’
    predict.traitglm: no visible global function definition for ‘coef’
    print.anova.manyany: no visible global function definition for
     ‘printCoefmat’
    print.anova.manylm: no visible global function definition for
     ‘printCoefmat’
    print.manyany: no visible global function definition for ‘qnorm’
    print.manyglm: no visible global function definition for ‘coef’
    print.manyglm: no visible global function definition for ‘naprint’
    print.manylm: no visible global function definition for ‘coef’
    print.manylm: no visible global function definition for ‘naprint’
    print.summary.manylm: no visible global function definition for
     ‘symnum’
    print.summary.manylm: no visible binding for global variable ‘quantile’
    print.summary.manylm: no visible global function definition for
     ‘quantile’
    quasibinomialMany: no visible global function definition for
     ‘make.link’
    quasipoisson: no visible global function definition for ‘make.link’
    rcalc: no visible global function definition for ‘var’
    residuals.glm1path: no visible global function definition for ‘runif’
    residuals.glm1path: no visible global function definition for ‘qnorm’
    residuals.manyany: no visible global function definition for ‘runif’
    residuals.manyglm: no visible global function definition for ‘coef’
    residuals.manyglm: no visible global function definition for ‘runif’
    residuals.manyglm: no visible global function definition for ‘qnorm’
    ridgeParamEst: no visible global function definition for ‘runif’
    ridgeParamEst: no visible global function definition for ‘cov’
    rstandard.manylm: no visible global function definition for ‘deviance’
    rstandard.manylm: no visible global function definition for
     ‘df.residual’
    rstandard.manylm: no visible global function definition for
     ‘weighted.residuals’
    shiftpoints: no visible global function definition for ‘na.omit’
    traitglm: no visible global function definition for ‘coef’
    transAxis: no visible global function definition for ‘terms’
    transAxis: no visible global function definition for ‘dev.off’
    weighted.residuals.manylm: no visible global function definition for
     ‘weights’
    weighted.residuals.manylm: no visible global function definition for
     ‘residuals’
    weights.manyglm: no visible global function definition for ‘naresid’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64