CRAN Package Check Results for Package nCal

Last updated on 2016-07-25 12:49:46.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2015.3-3 6.42 98.93 105.35 NOTE
r-devel-linux-x86_64-debian-gcc 2015.3-3 6.04 100.05 106.08 NOTE
r-devel-linux-x86_64-fedora-clang 2015.3-3 172.63 NOTE
r-devel-linux-x86_64-fedora-gcc 2015.3-3 169.89 NOTE
r-devel-osx-x86_64-clang 2015.3-3 134.75 NOTE
r-devel-windows-ix86+x86_64 2015.3-3 23.00 206.00 229.00 NOTE
r-patched-linux-x86_64 2015.3-3 5.80 97.28 103.07 NOTE
r-patched-solaris-sparc 2015.3-3 1025.60 NOTE
r-patched-solaris-x86 2015.3-3 267.90 NOTE
r-release-linux-x86_64 2015.3-3 7.57 97.20 104.77 NOTE
r-release-osx-x86_64-mavericks 2015.3-3 NOTE
r-release-windows-ix86+x86_64 2015.3-3 17.00 143.00 160.00 NOTE
r-oldrel-windows-ix86+x86_64 2015.3-3 23.00 155.00 178.00 ERROR

Check Details

Version: 2015.3-3
Check: R code for possible problems
Result: NOTE
    bcrm: no visible binding for global variable ‘coef’
    bcrm: no visible binding for global variable ‘var’
    bcrm: no visible binding for global variable ‘median’
    bcrm : <anonymous>: no visible global function definition for ‘density’
    bcrm: no visible binding for global variable ‘sd’
    bcrm : <anonymous>: no visible global function definition for
     ‘quantile’
    bcrm : <anonymous>: no visible global function definition for ‘median’
    bcrm : <anonymous>: no visible global function definition for ‘var’
    crm.fit: no visible global function definition for ‘coef’
    deviance.crm: no visible global function definition for ‘fitted’
    drm.fit: no visible global function definition for ‘vcov’
    find.be2: no visible global function definition for ‘lm’
    find.be2: no visible global function definition for ‘coef’
    get.S1: no visible global function definition for ‘integrate’
    get.S2: no visible global function definition for ‘integrate’
    get.abc: no visible global function definition for ‘integrate’
    get.abs.dev: no visible global function definition for ‘integrate’
    get.density.boundary.corrected: no visible global function definition
     for ‘density’
    getConc: no visible global function definition for ‘coef’
    getConc: no visible global function definition for ‘vcov’
    getConc: no visible binding for global variable ‘median’
    getConc: no visible binding for global variable ‘var’
    getConc: no visible binding for global variable ‘quantile’
    getMeanSd: no visible global function definition for ‘splinefun’
    glspl: no visible global function definition for ‘model.frame’
    glspl: no visible global function definition for ‘coef’
    glspl: no visible global function definition for ‘fitted’
    glspl: no visible global function definition for ‘uniroot’
    gnls.fit: no visible global function definition for ‘coef’
    gnls.fit: no visible binding for global variable ‘na.omit’
    gnls.fit: no visible global function definition for ‘vcov’
    lines.crm: no visible global function definition for ‘coef’
    mle.dr: no visible global function definition for ‘model.frame’
    mle.dr: no visible global function definition for ‘optim’
    mle.dr: no visible global function definition for ‘uniroot’
    ncal.character: no visible global function definition for ‘read.csv’
    ncal.formula: no visible global function definition for ‘aggregate’
    ncal.formula: no visible global function definition for ‘par’
    ncal.formula: no visible global function definition for ‘qt’
    ncal.formula: no visible global function definition for ‘coef’
    ncal.formula: no visible global function definition for ‘median’
    ncal.formula: no visible global function definition for ‘points’
    ncal.formula: no visible global function definition for ‘abline’
    ncal.formula: no visible global function definition for ‘lines’
    ncalGUI : call.getConc.fun: no visible global function definition for
     ‘capture.output’
    ncalGUI : update.status.fun: no visible global function definition for
     ‘as.formula’
    ncalGUI : update.status.fun: no visible global function definition for
     ‘write.csv’
    ncalGUI : update.status.fun: no visible global function definition for
     ‘dev.off’
    ncalGUI.2 : process.fun: no visible global function definition for
     ‘as.formula’
    ncalGUI.2 : process.fun: no visible global function definition for
     ‘write.csv’
    ncalGUI.2 : process.fun: no visible global function definition for
     ‘dev.off’
    plot.bcrm: no visible global function definition for ‘plot’
    plot.bcrm: no visible global function definition for ‘lines’
    plot.marginals: no visible global function definition for ‘plot’
    plot.marginals: no visible global function definition for ‘lines’
    plot.marginals: no visible global function definition for ‘legend’
    plot.marginals: no visible global function definition for ‘title’
    plot.marginals: no visible global function definition for ‘dev.off’
    plot5PL: no visible global function definition for ‘plot’
    plot5PL: no visible global function definition for ‘lines’
    predict.bcrm: no visible global function definition for ‘median’
    read.luminex.fixed.sheet.xls: no visible global function definition for
     ‘read.csv’
    read.luminex.sheet.xls: no visible global function definition for
     ‘read.csv’
    read.luminex.xls: no visible global function definition for ‘runif’
    simulate1curve: no visible global function definition for ‘rnorm’
    ss.fct.via.LL4: no visible global function definition for ‘coef’
    vcov.bcrm: no visible global function definition for ‘cov’
    Undefined global functions or variables:
     abline aggregate as.formula capture.output coef cov density dev.off
     fitted integrate legend lines lm median model.frame na.omit optim par
     plot points qt quantile read.csv rnorm runif sd splinefun title
     uniroot var vcov write.csv
    Consider adding
     importFrom("grDevices", "dev.off")
     importFrom("graphics", "abline", "legend", "lines", "par", "plot",
     "points", "title")
     importFrom("stats", "aggregate", "as.formula", "coef", "cov",
     "density", "fitted", "integrate", "lm", "median",
     "model.frame", "na.omit", "optim", "qt", "quantile",
     "rnorm", "runif", "sd", "splinefun", "uniroot", "var",
     "vcov")
     importFrom("utils", "capture.output", "read.csv", "write.csv")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2015.3-3
Check: files in ‘vignettes’
Result: NOTE
    The following directory looks like a leftover from 'knitr':
     ‘figure’
    Please remove from your package.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2015.3-3
Check: dependencies in R code
Result: NOTE
    Invalid MIT-MAGIC-COOKIE-1 key
Flavor: r-release-osx-x86_64-mavericks

Version: 2015.3-3
Check: R code for possible problems
Result: NOTE
    bcrm: no visible global function definition for 'startsWith'
    getVarComponent.bcrm: no visible global function definition for
     'endsWith'
    ncal.formula: no visible global function definition for 'startsWith'
    plot.marginals: no visible global function definition for 'startsWith'
    read.luminex.xls: no visible global function definition for
     'startsWith'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2015.3-3
Check: tests
Result: ERROR
    Running the tests in 'tests/doRUnit.R' failed.
    Last 13 lines of output:
     Number of test functions: 3
     Number of errors: 1
     Number of failures: 0
    
    
     1 Test Suite :
     nCal unit testing - 3 test functions, 1 error, 0 failures
     ERROR in test.ncal: Error in getVarComponent.bcrm(fit) : could not find function "endsWith"
     Error:
    
     unit testing failed (#test failures: 0, #R errors: 1)
    
     Execution halted
Flavor: r-oldrel-windows-ix86+x86_64

Version: 2015.3-3
Check: re-building of vignette outputs
Result: NOTE
    Error in re-building vignettes:
     ...
    Quitting from lines 100-102 (nCal-vignette.Rnw)
    Error: processing vignette 'nCal-vignette.Rnw' failed with diagnostics:
    could not find function "endsWith"
    Execution halted
Flavor: r-oldrel-windows-ix86+x86_64