CRAN Package Check Results for Package netClass

Last updated on 2014-04-24 07:52:32.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 10.15 112.55 122.70 OK
r-devel-linux-x86_64-debian-gcc 1.2.1 10.28 113.48 123.76 OK
r-devel-linux-x86_64-fedora-clang 1.2.1 287.74 OK
r-devel-linux-x86_64-fedora-gcc 1.2.1 278.99 OK
r-devel-osx-x86_64-clang 1.2.1 219.63 OK
r-devel-osx-x86_64-gcc 1.2.1 ERROR
r-devel-windows-ix86+x86_64 1.2.1 25.00 158.00 183.00 OK
r-patched-linux-x86_64 1.2.1 9.88 110.05 119.93 OK
r-patched-solaris-sparc 1.2.1 1455.00 OK
r-patched-solaris-x86 1.2.1 348.60 OK
r-release-linux-ix86 1.2.1 14.00 161.00 175.00 OK
r-release-linux-x86_64 1.2.1 10.02 110.76 120.78 OK
r-release-osx-x86_64-mavericks 1.2.1 ERROR
r-release-osx-x86_64-snowleopard 1.2.1 ERROR
r-release-windows-ix86+x86_64 1.2.1 23.00 160.00 183.00 OK
r-oldrel-windows-ix86+x86_64 1.2.1 26.00 141.00 167.00 OK

Check Details

Version: 1.2.1
Check: package dependencies
Result: ERROR
    Packages required but not available:
     ‘AnnotationDbi’ ‘graph’ ‘igraph’ ‘samr’
    
    Packages suggested but not available for checking:
     ‘Biobase’ ‘KEGG.db’ ‘pathClass’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-devel-osx-x86_64-gcc

Version: 1.2.1
Check: package dependencies
Result: ERROR
    Packages required but not available: ‘AnnotationDbi’ ‘graph’ ‘samr’
    
    Packages suggested but not available for checking:
     ‘Biobase’ ‘KEGG.db’ ‘pathClass’
    
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavor: r-release-osx-x86_64-mavericks

Version: 1.2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘KEGG.db’
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    probeset2pathway: no visible binding for global variable
     ‘KEGGEXTID2PATHID’
    probeset2pathwayTrain: no visible binding for global variable
     ‘KEGGEXTID2PATHID’
Flavor: r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘netClass-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cv.aep
    > ### Title: Cross validation for aepSVM (aepSVM)
    > ### Aliases: cv.aep
    > ### Keywords: aep
    >
    > ### ** Examples
    >
    > library(netClass)
    > data(expr)
    > data(ad.matrix)
    > x <- expr$genes
    > y <- expr$y
    >
    > library(KEGG.db)
    Error in library(KEGG.db) : there is no package called ‘KEGG.db’
    Execution halted
Flavor: r-release-osx-x86_64-snowleopard