CRAN Package Check Results for Package netClass

Last updated on 2014-09-30 05:47:42.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.2.1 10.87 117.00 127.88 NOTE
r-devel-linux-x86_64-debian-gcc 1.2.1 11.07 116.40 127.46 NOTE
r-devel-linux-x86_64-fedora-clang 1.2.1 313.85 NOTE
r-devel-linux-x86_64-fedora-gcc 1.2.1 299.70 NOTE
r-devel-osx-x86_64-clang 1.2.1 225.55 NOTE
r-devel-windows-ix86+x86_64 1.2.1 28.00 188.00 216.00 NOTE
r-patched-linux-x86_64 1.2.1 10.01 109.56 119.57 OK
r-patched-solaris-sparc 1.2.1 1438.40 OK
r-patched-solaris-x86 1.2.1 374.80 OK
r-release-linux-ix86 1.2.1 11.53 129.19 140.72 OK
r-release-linux-x86_64 1.2.1 9.71 112.64 122.35 OK
r-release-osx-x86_64-mavericks 1.2.1 ERROR
r-release-osx-x86_64-snowleopard 1.2.1 ERROR
r-release-windows-ix86+x86_64 1.2.1 25.00 153.00 178.00 OK
r-oldrel-windows-ix86+x86_64 1.2.1 24.00 149.00 173.00 OK

Check Details

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    XH: no visible binding for global variable ‘exprs’
    XIs: no visible binding for global variable ‘exprs’
    cv.aep: no visible global function definition for ‘mclapply’
    cv.frsvm: no visible global function definition for ‘mclapply’
    cv.hubc: no visible global function definition for ‘mclapply’
    cv.pac: no visible global function definition for ‘mclapply’
    cv.stsvm: no visible global function definition for ‘mclapply’
    probeset2pathway: no visible binding for global variable
     ‘KEGGEXTID2PATHID’
    probeset2pathwayTrain: no visible binding for global variable
     ‘KEGGEXTID2PATHID’
    spanbound: no visible global function definition for ‘param’
    spanbound: no visible global function definition for ‘error’
    spanbound: no visible global function definition for ‘kernelf’
    spanbound: no visible global function definition for ‘b’
    svm.predict: no visible global function definition for ‘b’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64

Version: 1.2.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘KEGG.db’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: R code for possible problems
Result: NOTE
    probeset2pathway: no visible binding for global variable
     ‘KEGGEXTID2PATHID’
    probeset2pathwayTrain: no visible binding for global variable
     ‘KEGGEXTID2PATHID’
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard

Version: 1.2.1
Check: examples
Result: ERROR
    Running examples in ‘netClass-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: cv.aep
    > ### Title: Cross validation for aepSVM (aepSVM)
    > ### Aliases: cv.aep
    > ### Keywords: aep
    >
    > ### ** Examples
    >
    > library(netClass)
    > data(expr)
    > data(ad.matrix)
    > x <- expr$genes
    > y <- expr$y
    >
    > library(KEGG.db)
    Error in library(KEGG.db) : there is no package called ‘KEGG.db’
    Execution halted
Flavors: r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard