CRAN Package Check Results for Package netmeta

Last updated on 2017-04-24 10:47:31.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.9-4 1.17 67.86 69.03 OK
r-devel-linux-x86_64-debian-gcc 0.9-4 1.14 68.55 69.69 OK
r-devel-linux-x86_64-fedora-clang 0.9-4 132.54 OK --no-stop-on-test-error
r-devel-linux-x86_64-fedora-gcc 0.9-4 124.59 OK --no-stop-on-test-error
r-devel-windows-ix86+x86_64 0.9-4 5.00 103.00 108.00 OK
r-patched-linux-x86_64 0.9-4 1.10 65.22 66.33 OK
r-patched-solaris-sparc 0.9-4 738.90 OK
r-patched-solaris-x86 0.9-4 147.30 OK
r-release-linux-x86_64 0.9-4 1.19 64.85 66.03 OK
r-release-windows-ix86+x86_64 0.9-4 5.00 116.00 121.00 OK
r-release-osx-x86_64 0.9-4 ERROR
r-oldrel-windows-ix86+x86_64 0.9-4 4.00 133.00 137.00 OK
r-oldrel-osx-x86_64 0.9-4 OK

Check Details

Version: 0.9-4
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘hasseDiagram’
Flavor: r-release-osx-x86_64

Version: 0.9-4
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘hasseDiagram’
Flavor: r-release-osx-x86_64

Version: 0.9-4
Check: examples
Result: ERROR
    Running examples in ‘netmeta-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: hasse
    > ### Title: Hasse diagram
    > ### Aliases: hasse
    > ### Keywords: Hasse diagram hplot
    >
    > ### ** Examples
    >
    > # Use depression dataset
    > #
    > data(Linde2015)
    > #
    > # Define order of treatments
    > #
    > trts <- c("TCA", "SSRI", "SNRI", "NRI",
    + "Low-dose SARI", "NaSSa", "rMAO-A", "Hypericum",
    + "Placebo")
    > #
    > # Outcome labels
    > #
    > outcomes <- c("Early response", "Early remission")
    > #
    > # (1) Early response
    > #
    > p1 <- pairwise(treat = list(treatment1, treatment2, treatment3),
    + event = list(resp1, resp2, resp3),
    + n = list(n1, n2, n3),
    + studlab = id, data = Linde2015, sm = "OR")
    > #
    > net1 <- netmeta(p1,
    + comb.fixed = FALSE, comb.random = TRUE,
    + seq = trts, ref = "Placebo")
    Warning: Comparisons with missing TE / seTE or zero seTE not considered in network meta-analysis.
    Studies not considered in network meta-analysis:
     studlab treat1 treat2 TE seTE
     14 TCA SSRI NA NA
     18 TCA Placebo NA NA
     21 TCA rMAO-A NA NA
     27 SSRI Placebo NA NA
     51 TCA rMAO-A NA NA
     130 NaSSa Placebo NA NA
     130 TCA NaSSa NA NA
     130 TCA Placebo NA NA
     131 SSRI SNRI NA NA
    Warning: Note, treatments within a comparison have been re-sorted in increasing order.
    > #
    > # (2) Early remission
    > #
    > p2 <- pairwise(treat = list(treatment1, treatment2, treatment3),
    + event = list(remi1, remi2, remi3),
    + n = list(n1, n2, n3),
    + studlab = id, data = Linde2015, sm = "OR")
    > #
    > net2 <- netmeta(p2,
    + comb.fixed = FALSE, comb.random = TRUE,
    + seq = trts, ref = "Placebo")
    Warning: Comparisons with missing TE / seTE or zero seTE not considered in network meta-analysis.
    Studies not considered in network meta-analysis:
     studlab treat1 treat2 TE seTE
     1 TCA Placebo NA NA
     1 TCA SNRI NA NA
     1 SNRI Placebo NA NA
     11 SSRI Placebo NA NA
     11 TCA Placebo NA NA
     11 TCA SSRI NA NA
     14 TCA SSRI NA NA
     18 TCA Placebo NA NA
     20 TCA SSRI NA NA
     26 SSRI Placebo NA NA
     53 NaSSa Placebo NA NA
     53 SSRI NaSSa NA NA
     53 SSRI Placebo NA NA
     56 TCA SSRI NA NA
     73 Hypericum Placebo NA NA
     90 TCA SSRI NA NA
     96 TCA SSRI NA NA
     121 Low-dose SARI NaSSa NA NA
     130 NaSSa Placebo NA NA
     130 TCA NaSSa NA NA
     130 TCA Placebo NA NA
    Warning: Note, treatments within a comparison have been re-sorted in increasing order.
    > #
    > # Partial order of treatment rankings (all five outcomes)
    > #
    > po <- netposet(netrank(net1, small.values = "bad"),
    + netrank(net2, small.values = "bad"),
    + outcomes = outcomes)
    > #
    > # Hasse diagram
    > #
    > hasse(po)
    Error: Library 'hasseDiagram' missing.
     Please use the following R commands for installation:
     source("https://bioconductor.org/biocLite.R")
     biocLite("Rgraphviz")
     install.packages("hasseDiagram")
    Execution halted
Flavor: r-release-osx-x86_64