Last updated on 2018-07-21 01:46:45 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.13.0.1 | 8.12 | 59.14 | 67.26 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.13.0.1 | 7.29 | 46.74 | 54.03 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.13.0.1 | 81.27 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.13.0.1 | 80.27 | OK | |||
| r-devel-windows-ix86+x86_64 | 1.13.0.1 | 20.00 | 139.00 | 159.00 | OK | |
| r-patched-linux-x86_64 | 1.13.0.1 | OK | ||||
| r-patched-solaris-x86 | 1.13.0.1 | 106.40 | ERROR | |||
| r-release-linux-x86_64 | 1.13.0.1 | 8.41 | 58.22 | 66.63 | OK | |
| r-release-windows-ix86+x86_64 | 1.13.0.1 | 27.00 | 100.00 | 127.00 | ERROR | |
| r-release-osx-x86_64 | 1.13.0.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.13.0.1 | 15.00 | 166.00 | 181.00 | OK | |
| r-oldrel-osx-x86_64 | 1.13.0.1 | OK |
Version: 1.13.0.1
Check: examples
Result: ERROR
Running examples in ‘network-Ex.R’ failed
The error most likely occurred in:
> ### Name: read.paj
> ### Title: Read a Pajek Project or Network File and Convert to an R
> ### 'Network' Object
> ### Aliases: read.paj read.paj.simplify switchArcDirection
> ### readAndVectorizeLine
> ### Keywords: datasets
>
> ### ** Examples
>
>
> require(network)
>
> par(mfrow=c(2,2))
>
> test.net.1 <- read.paj("http://vlado.fmf.uni-lj.si/pub/networks/data/GD/gd98/A98.net")
Warning in file(file, "rt") :
URL 'http://vlado.fmf.uni-lj.si/pub/networks/data/GD/gd98/A98.net': status was 'Failure when receiving data from the peer'
Error in file(file, "rt") :
cannot open the connection to 'http://vlado.fmf.uni-lj.si/pub/networks/data/GD/gd98/A98.net'
Calls: read.paj -> file
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.13.0.1
Check: tests
Result: ERROR
Running ‘as.edgelist_tests.R’
Running ‘general.tests.R’
Running ‘general.tests2.R’
Running ‘list.attribute.tests.R’
Running ‘misc_tests.R’
Running ‘network.access.test.R’
Running ‘network.battery.R’
Running ‘pathological.tests.R’
Running ‘plot_tests.R’
Running ‘plotflo.R’
Running ‘read.paj_tests.R’
Running ‘vignette.R’
Running the tests in ‘tests/read.paj_tests.R’ failed.
Complete output:
> # test for reading pajek formatted files
> require(testthat)
Loading required package: testthat
> require(network)
Loading required package: network
network: Classes for Relational Data
Version 1.13.0.1 created on 2015-08-31.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
Mark S. Handcock, University of California -- Los Angeles
David R. Hunter, Penn State University
Martina Morris, University of Washington
Skye Bender-deMoll, University of Washington
For citation information, type citation("network").
Type help("network-package") to get started.
>
>
> # test for case of verticse, but no edges/arcs
> tmptest<-tempfile()
> cat("*Vertices 2
+ 1 1231062
+ 2 1231095
+ *Arcs
+ *Edges
+ ",file=tmptest)
> noEdges<-read.paj(tmptest)
> expect_equal(network.size(noEdges),2)
> expect_equal(network.edgecount(noEdges),0)
>
>
> # check arcs vs edges parsing
>
> # arcs only
>
> tmptest<-tempfile()
> cat("*Vertices 3
+ 1 'A'
+ 2 'B'
+ 3 'C'
+ *Arcs
+ 1 2 1
+ 1 3 1
+ ",file=tmptest)
> arcsOnly<-read.paj(tmptest)
> expect_true(is.directed(arcsOnly))
> expect_equal(network.edgecount(arcsOnly),2)
>
> # edges only
> tmptest<-tempfile()
> cat('*Vertices 9
+ 1 "1" 0.3034 0.7561
+ 2 "2" 0.4565 0.6039
+ 3 "3" 0.4887 0.8188
+ 4 "4" 0.5687 0.4184
+ 5 "5" 0.3574 0.4180
+ 6 "6" 0.7347 0.2678
+ 7 "7" 0.9589 0.3105
+ 8 "8" 0.8833 0.1269
+ 9 "9" 0.7034 0.0411
+ *Arcs
+ *Edges
+ 1 2 1
+ 1 3 1
+ 2 3 1
+ 2 4 1
+ 2 5 1
+ 4 5 1
+ 4 6 1
+ 6 7 1
+ 6 8 1
+ 6 9 1
+ 7 8 1
+ 8 9 1
+ ',file=tmptest)
> edgesOnly<-read.paj(tmptest)
> expect_false(is.directed(edgesOnly))
> expect_equal(network.edgecount(edgesOnly),12)
>
>
> # both arcs and edges
> # network will be directed, each *edges record will create one arc in each direction
> tmptest<-tempfile()
> cat("*Vertices 4
+ 1 'A'
+ 2 'B'
+ 3 'C'
+ 4 'D'
+ *Arcs
+ 1 2 1
+ 1 3 1
+ *Edges
+ 3 4 1
+ ",file=tmptest)
> arcsNEdges<-read.paj(tmptest)
> expect_true(is.directed(arcsNEdges))
> expect_equal(network.edgecount(arcsNEdges),4)
> as.matrix(arcsNEdges)
A B C D
A 0 1 1 0
B 0 0 0 0
C 0 0 0 1
D 0 0 1 0
>
>
> # ----- error testing
> tmptest<-tempfile()
> cat("*Vertices 2
+ 1 'A'
+ 2 'B'
+ *Arcs
+ 1
+ ",file=tmptest)
> expect_error(read.paj(tmptest),regexp = 'does not appear to have the required')
>
> tmptest<-tempfile()
> cat("*Vertices 2
+ 1 'A'
+ 2 'B'
+ *Arcs
+ 1 A 1
+ ",file=tmptest)
> expect_error(read.paj(tmptest),regexp = 'contains non-numeric or NA values')
Warning message:
In read.paj(tmptest) : NAs introduced by coercion
>
> tmptest<-tempfile()
> cat("*Vertices 2
+ 1 'A'
+ 2 'B'
+ *Arcs
+ 1 2.5 1
+ ",file=tmptest)
> expect_error(read.paj(tmptest),regexp = 'contains non-integer values')
>
>
> # check vertex graphic attribute fill-in
> tmptest<-tempfile()
> cat("*Vertices 4
+ 1 'A' 0 0 0 box
+ 2 'B' 0 0 0
+ 3 'C' 0 0 0
+ 4 'D' 0 0 0 ellipse
+ *Arcs
+ 1 2 1
+ 1 3 1
+ ",file=tmptest)
> fillIn<-read.paj(tmptest)
> expect_equal(fillIn%v%'shape',c('box','box','box','ellipse'))
>
>
> # test stuff in file comments
> ########## but multirelational ############ only ~200 nodes
> #GulfLDays.net
> #GulfLMonths.net
> #GulfLDow.net
> #gulfAllDays.net #GulfADays.zip
> #gulfAllMonths.net #GulfAMonths.zip
> #LevantDays.net
> #LevantMonths.net
> #BalkanDays.net
> #BalkanMonths.net
>
> #arcs and edges both present search for " #these have both arc and edge lines " or "URL has a net file"
> #Graph drawing competition page (GD)
> #C95,C95,B98,A99,C99,A99m
>
>
> #things to do:
> #handle ragged array .net files like "CSphd.net" DONE!!
> #handel two mode networks DONE!!
> #handle mix of edges and arcs DONE!!
> #handle multirelational pajek files
>
> #issue with read.table and number.cols and fill...SanJuanSur_deathmessage.net has one row with 8 all the rest (including the first 5 have 5)
>
>
>
> # this file has character encoding issues
> scotland<-tempfile('scotland',fileext='.zip')
> download.file('http://vlado.fmf.uni-lj.si/pub/networks/data/esna/scotland.zip',scotland)
trying URL 'http://vlado.fmf.uni-lj.si/pub/networks/data/esna/scotland.zip'
Error in download.file("http://vlado.fmf.uni-lj.si/pub/networks/data/esna/scotland.zip", :
cannot open URL 'http://vlado.fmf.uni-lj.si/pub/networks/data/esna/scotland.zip'
In addition: Warning message:
In download.file("http://vlado.fmf.uni-lj.si/pub/networks/data/esna/scotland.zip", :
URL 'http://vlado.fmf.uni-lj.si/pub/networks/data/esna/scotland.zip': status was 'Failure when receiving data from the peer'
Execution halted
Flavor: r-patched-solaris-x86
Version: 1.13.0.1
Check: running examples for arch ‘i386’
Result: ERROR
Running examples in 'network-Ex.R' failed
The error most likely occurred in:
> ### Name: read.paj
> ### Title: Read a Pajek Project or Network File and Convert to an R
> ### 'Network' Object
> ### Aliases: read.paj read.paj.simplify switchArcDirection
> ### readAndVectorizeLine
> ### Keywords: datasets
>
> ### ** Examples
>
>
> require(network)
>
> par(mfrow=c(2,2))
>
> test.net.1 <- read.paj("http://vlado.fmf.uni-lj.si/pub/networks/data/GD/gd98/A98.net")
Warning in file(file, "rt") :
InternetOpenUrl failed: 'Das Zeitlimit für den Vorgang wurde erreicht.'
Error in file(file, "rt") : cannot open the connection
Calls: read.paj -> file
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.13.0.1
Check: running examples for arch ‘x64’
Result: ERROR
Running examples in 'network-Ex.R' failed
The error most likely occurred in:
> ### Name: read.paj
> ### Title: Read a Pajek Project or Network File and Convert to an R
> ### 'Network' Object
> ### Aliases: read.paj read.paj.simplify switchArcDirection
> ### readAndVectorizeLine
> ### Keywords: datasets
>
> ### ** Examples
>
>
> require(network)
>
> par(mfrow=c(2,2))
>
> test.net.1 <- read.paj("http://vlado.fmf.uni-lj.si/pub/networks/data/GD/gd98/A98.net")
Warning in file(file, "rt") :
InternetOpenUrl failed: 'Das Zeitlimit für den Vorgang wurde erreicht.'
Error in file(file, "rt") : cannot open the connection
Calls: read.paj -> file
Execution halted
Flavor: r-release-windows-ix86+x86_64