CRAN Package Check Results for Package nlme

Last updated on 2017-12-15 04:47:29 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 3.1-134 24.64 82.63 107.27 FAIL
r-devel-linux-x86_64-debian-gcc 3.1-134 20.79 168.55 189.34 WARN
r-devel-linux-x86_64-fedora-clang 3.1-134 282.66 WARN
r-devel-linux-x86_64-fedora-gcc 3.1-134 276.88 WARN
r-devel-windows-ix86+x86_64 3.1-134 74.00 343.00 417.00 OK
r-patched-linux-x86_64 3.1-131 25.33 224.71 250.04 OK
r-patched-solaris-x86 3.1-131 ERROR
r-release-linux-x86_64 3.1-131 22.79 223.80 246.59 OK
r-release-windows-ix86+x86_64 3.1-131 46.00 303.00 349.00 OK
r-release-osx-x86_64 3.1-131 OK
r-oldrel-windows-ix86+x86_64 3.1-131 66.00 419.00 485.00 OK
r-oldrel-osx-x86_64 3.1-131 OK

Check Details

Version: 3.1-134
Check: use of S3 registration
Result: WARN
    Registered S3 methods from standard package(s) overwritten by 'nlme':
     method from
     extractAIC.gls MASS
     extractAIC.lme MASS
     terms.gls MASS
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 3.1-134
Check: pragmas in C/C++ headers and code
Result: FAIL
    
Flavor: r-devel-linux-x86_64-debian-clang

Version: 3.1-131
Check: tests
Result: ERROR
     Running ‘anova.gls.R’
     Running ‘augPred_lab.R’ [47s/82s]
     Running ‘augPredmissing.R’
     Running ‘coef.R’
     Comparing ‘coef.Rout’ to ‘coef.Rout.save’ ... OK
     Running ‘contrMat.R’
     Running ‘data.frame.R’
     Running ‘deparse.R’
     Running ‘deviance.R’
     Running ‘fitted.R’
     Running ‘getData.R’
     Running ‘gls.R’
     Running ‘lmList.R’
     Running ‘lme.R’ [7s/10s]
     Comparing ‘lme.Rout’ to ‘lme.Rout.save’ ... OK
     Running ‘missing.R’
     Comparing ‘missing.Rout’ to ‘missing.Rout.save’ ... OK
     Running ‘nlme.R’
     Running ‘nlme2.R’
     Running ‘predict.lme.R’
     Running ‘sigma-fixed-etc.R’ [37s/40s]
    Running the tests in ‘tests/sigma-fixed-etc.R’ failed.
    Last 13 lines of output:
     > ##------------------------------------------------------ REML ---
     > method <- "REML"
     > cat("\nFixed sigma= ",sigma," estimation method ", method,"\n")
    
     Fixed sigma= 1 estimation method REML
     > t7.fix.REML.lme <- lme( current ~voltage + I(voltage^2), data = Wafer,
     + random = list(Wafer = pdDiag(~voltage + I(voltage^2)),
     + Site = pdDiag(~voltage + I(voltage^2)) ),
     + control = lmeControl(sigma = 1),
     + method = method)
     Error in lme.formula(current ~ voltage + I(voltage^2), data = Wafer, random = list(Wafer = pdDiag(~voltage + :
     nlminb problem, convergence error code = 1
     message = false convergence (8)
     Calls: lme -> lme.formula
     Execution halted
Flavor: r-patched-solaris-x86