CRAN Package Check Results for Package nlrwr

Last updated on 2014-07-31 03:48:36.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1-0 2.02 24.55 26.56 NOTE
r-devel-linux-x86_64-debian-gcc 1.1-0 1.83 24.72 26.54 NOTE
r-devel-linux-x86_64-fedora-clang 1.1-0 61.03 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1-0 52.26 NOTE
r-devel-osx-x86_64-clang 1.1-0 51.97 NOTE
r-devel-windows-ix86+x86_64 1.1-0 10.00 45.00 55.00 NOTE
r-patched-linux-x86_64 1.1-0 1.97 25.28 27.26 NOTE
r-patched-solaris-sparc 1.1-0 297.50 NOTE
r-patched-solaris-x86 1.1-0 73.80 NOTE
r-release-linux-ix86 1.1-0 2.54 34.93 37.47 NOTE
r-release-linux-x86_64 1.1-0 2.02 26.47 28.49 NOTE
r-release-osx-x86_64-mavericks 1.1-0 NOTE
r-release-osx-x86_64-snowleopard 1.1-0 ERROR
r-release-windows-ix86+x86_64 1.1-0 15.00 68.00 83.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1-0 15.00 73.00 88.00 NOTE

Check Details

Version: 1.1-0
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     alr3 car drc HydroMe lattice lmtest MASS NISTnls
     nlme nls2 nlstools NRAIA sandwich
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64

Version: 1.1-0
Check: top-level files
Result: NOTE
    File
     inst/LICENCE
    will install at top-level and is not mentioned in the DESCRIPTION file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-0
Check: dependencies in R code
Result: NOTE
    'library' or 'require' call to drc which was already attached by Depends.
     Please remove these calls from your code.
    Packages in Depends field not imported from:
     HydroMe MASS NISTnls NRAIA alr3 car drc lattice
     lmtest nlme nls2 nlstools sandwich
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    Unexported object imported by a ':::' call: stats:::format.perc
     See the note in ?`:::` about the use of this operator.
    See the information on DESCRIPTION files in the chapter Creating R
    packages of the Writing R Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-0
Check: R code for possible problems
Result: NOTE
    File nlrwr/R/onAttach.R :
     .onAttach calls:
     cat("\n")
     cat("'nlrwr' has been loaded.\n\n")
     cat("Please cite R and 'nlrwr' if used for a publication,\n")
     cat("for references type 'citation()' and 'citation('nlrwr')'.\n\n")
     library(drc)
    
    Package startup functions should not change the search path.
    Package startup functions should use packageStartupMessage to
     generate messages.
    See section Good practice in '?.onAttach'.
    
    Found the following assignments to the global environment:
    File nlrwr/R/boxcox.nls.R :
     assign("bcFct1", bfFct(lambda[i]), envir = .GlobalEnv)
     assign("bcFct2", bfFct2(lambda[i]), envir = .GlobalEnv)
     assign("bcFct1", bfFct(lv), envir = .GlobalEnv)
     assign("bcFct2", bfFct2(lv), envir = .GlobalEnv)
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-release-linux-ix86, r-release-linux-x86_64

Version: 1.1-0
Check: Rd files
Result: NOTE
    prepare_Rd: L.minor.Rd:32-34: Dropping empty section \examples
    prepare_Rd: O.mykiss.Rd:34: Dropping empty section \references
    prepare_Rd: SSexp.Rd:35: Dropping empty section \note
    prepare_Rd: btb.Rd:39-41: Dropping empty section \examples
    prepare_Rd: isomerization.Rd:37-38: Dropping empty section \references
    prepare_Rd: sockeye.Rd:36-37: Dropping empty section \examples
    prepare_Rd: sts.Rd:38-39: Dropping empty section \examples
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-0
Check: Rd \usage sections
Result: NOTE
    S3 methods shown with full name in documentation object 'boxcox.nls':
     boxcox.nls
    
    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter Writing R documentation files in the Writing R
    Extensions manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-0
Check: top-level files
Result: NOTE
    File
     inst/LICENCE
    will install at top-level and is not mentioned in the DESCRIPTION file.
    Non-standard file/directory found at top level:
     scripts
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-0
Check: Rd line widths
Result: NOTE
    Rd file 'M.merluccius.Rd':
     \examples lines wider than 100 characters:
     M.merluccius.m1<-nls(num.fish~spawn.biomass*a/(1+spawn.biomass/b),data=M.merluccius,start=list(a=5, b=5))
    
    Rd file 'boxcox.nls.Rd':
     \usage lines wider than 90 characters:
     boxcox.nls(object, lambda = seq(-2, 2, 1/10), plotit = TRUE, start, eps = 1/50, bcAdd = 0, level = 0.95,
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.1-0
Check: R code for possible problems
Result: NOTE
    File nlrwr/R/onAttach.R :
     .onAttach calls:
     cat("\n")
     cat("'nlrwr' has been loaded.\n\n")
     cat("Please cite R and 'nlrwr' if used for a publication,\n")
     cat("for references type 'citation()' and 'citation('nlrwr')'.\n\n")
     library(drc)
    
    Package startup functions should not change the search path.
    Package startup functions should use packageStartupMessage to
     generate messages.
    See section Good practice in '?.onAttach'.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1-0
Check: whether package can be installed
Result: ERROR
    Installation failed.
Flavor: r-release-osx-x86_64-snowleopard