CRAN Package Check Results for Package noisyr

Last updated on 2021-04-10 15:47:50 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.0 3.40 47.88 51.28 NOTE
r-devel-linux-x86_64-debian-gcc 0.1.0 2.75 36.11 38.86 NOTE
r-devel-linux-x86_64-fedora-clang 0.1.0 75.09 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.0 64.71 NOTE
r-devel-windows-ix86+x86_64 0.1.0 7.00 51.00 58.00 NOTE
r-devel-windows-x86_64-gcc10-UCRT 0.1.0 ERROR
r-patched-linux-x86_64 0.1.0 2.79 46.40 49.19 OK
r-patched-solaris-x86 0.1.0 88.30 OK
r-release-linux-x86_64 0.1.0 2.82 45.97 48.79 OK
r-release-macos-x86_64 0.1.0 OK
r-release-windows-ix86+x86_64 0.1.0 6.00 72.00 78.00 OK
r-oldrel-macos-x86_64 0.1.0 ERROR
r-oldrel-windows-ix86+x86_64 0.1.0 6.00 51.00 57.00 OK

Check Details

Version: 0.1.0
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 0.1.0
Check: package dependencies
Result: ERROR
    Package required but not available: 'Rsamtools'
    
    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in ‘noisyr-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: calculate_distance_matrices_transcript
    > ### Title: Calcualte the distance matrices using the BAM files
    > ### Aliases: calculate_distance_matrices_transcript
    >
    > ### ** Examples
    >
    > bams <- rep(system.file("extdata", "ex1.bam", package="Rsamtools", mustWork=TRUE), 2)
    > genes <- data.frame("id" = 1:2,
    + "gene_id" = c("gene1", "gene2"),
    + "seqid" = c("seq1", "seq2"),
    + "start" = 1,
    + "end" = 1600)
    > obj <- calculate_distance_matrices_transcript(
    + bams = bams,
    + genes = genes,
    + mapq.unique = 99
    + )
    Calculating distances...
    Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
     there is no package called ‘GenomeInfoDbData’
    Calls: calculate_distance_matrices_transcript ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
    Execution halted
Flavor: r-oldrel-macos-x86_64