CRAN Package Check Results for Package npde

Last updated on 2014-04-24 11:48:50.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 4.12 38.92 43.04 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 3.74 38.63 42.37 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 83.96 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 80.70 NOTE
r-devel-osx-x86_64-clang 2.0 70.83 NOTE
r-devel-osx-x86_64-gcc 2.0 NOTE
r-devel-windows-ix86+x86_64 2.0 9.00 58.00 67.00 NOTE
r-patched-linux-x86_64 2.0 3.80 39.06 42.86 NOTE
r-patched-solaris-sparc 2.0 488.00 NOTE
r-patched-solaris-x86 2.0 100.50 NOTE
r-release-linux-ix86 2.0 7.00 60.00 67.00 NOTE
r-release-linux-x86_64 2.0 3.76 38.72 42.48 NOTE
r-release-osx-x86_64-mavericks 2.0 WARN
r-release-osx-x86_64-snowleopard 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 12.00 76.00 88.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 10.00 59.00 69.00 NOTE

Check Details

Version: 2.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘stats’
     All declared Imports should be used.
    Packages in Depends field not imported from:
     ‘mclust’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter ‘Creating R
    packages’ of the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    File ‘npde/R/zzz.R’:
     .onLoad calls:
     packageStartupMessage(" Loading library npde, version 2.0, August 2012\n please direct bugs, questions and feedback to emmanuelle.comets@inserm.fr\n")
    
    See section ‘Good practice’ in '?.onAttach'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-osx-x86_64-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-ix86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-osx-x86_64-snowleopard, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'dist.pred.sim.Rd':
     \examples lines wider than 100 characters:
     # defaults to computing the pd and npde for 100 simulated datasets (in the theophylline example, this uses all the simulated datasets)
    
    Rd file 'virload.Rd':
     \examples lines wider than 100 characters:
     plot(Log_VL~Time,data=virload,xlab="Time (d)",ylab="Viral loads, base 10 logarithmic scale (cp/mL)")
     plot(Log_VL~Time,data=virload50,xlab="Time (d)",ylab="Viral loads, base 10 logarithmic scale (cp/mL)")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.0
Check: PDF version of manual
Result: WARNING
    LaTeX errors when creating PDF version.
    This typically indicates Rd problems.
    LaTeX errors found:
    ! LaTeX Error: File `upquote.sty' not found.
    
    Type X to quit or <RETURN> to proceed,
    or enter new name. (Default extension: sty)
    
    1cfb2106/Rd2.tex:8: ==> Fatal error occurred, no output PDF file produced!
Flavor: r-release-osx-x86_64-mavericks

Version: 2.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: 'stats'
     All declared Imports should be used.
    Packages in Depends field not imported from:
     'mclust' 'methods'
     These packages need to be imported from for the case when
     this namespace is loaded but not attached.
    See the information on DESCRIPTION files in the chapter 'Creating R
    packages' of the 'Writing R Extensions' manual.
Flavor: r-release-osx-x86_64-snowleopard