CRAN Package Check Results for Package npde

Last updated on 2015-07-01 13:47:24.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0 3.68 33.80 37.49 NOTE
r-devel-linux-x86_64-debian-gcc 2.0 3.63 33.56 37.19 NOTE
r-devel-linux-x86_64-fedora-clang 2.0 73.15 NOTE
r-devel-linux-x86_64-fedora-gcc 2.0 71.29 NOTE
r-devel-osx-x86_64-clang 2.0 68.53 NOTE
r-devel-windows-ix86+x86_64 2.0 12.00 54.00 66.00 NOTE
r-patched-linux-x86_64 2.0 3.44 34.45 37.89 NOTE
r-patched-solaris-sparc 2.0 462.00 NOTE
r-patched-solaris-x86 2.0 93.60 NOTE
r-release-linux-x86_64 2.0 3.58 33.69 37.27 NOTE
r-release-osx-x86_64-mavericks 2.0 NOTE
r-release-windows-ix86+x86_64 2.0 9.00 64.00 73.00 NOTE
r-oldrel-windows-ix86+x86_64 2.0 13.00 63.00 76.00 NOTE

Check Details

Version: 2.0
Check: DESCRIPTION meta-information
Result: NOTE
    Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64

Version: 2.0
Check: top-level files
Result: NOTE
    Non-standard file/directory found at top level:
     ‘doc’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘stats’
     All declared Imports should be used.
    Packages in Depends field not imported from:
     ‘mclust’ ‘methods’
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    File ‘npde/R/zzz.R’:
     .onLoad calls:
     packageStartupMessage(" Loading library npde, version 2.0, August 2012\n please direct bugs, questions and feedback to emmanuelle.comets@inserm.fr\n")
    
    See section ‘Good practice’ in '?.onAttach'.
    
    autonpde: no visible global function definition for ‘new’
    aux.plot.dist: no visible global function definition for ‘rnorm’
    aux.plot.dist: no visible global function definition for ‘runif’
    aux.plot.dist: no visible global function definition for ‘qnorm’
    aux.plot.dist: no visible binding for global variable ‘quantile’
    aux.plot.dist: no visible global function definition for ‘polygon’
    aux.plot.dist: no visible global function definition for ‘lines’
    aux.plot.dist: no visible global function definition for ‘points’
    aux.plot.dist: no visible global function definition for ‘abline’
    aux.plot.hist: no visible global function definition for ‘rnorm’
    aux.plot.hist: no visible global function definition for ‘runif’
    aux.plot.hist: no visible global function definition for ‘hist’
    aux.plot.hist: no visible binding for global variable ‘quantile’
    aux.plot.hist: no visible global function definition for ‘rect’
    aux.plot.hist: no visible global function definition for ‘segments’
    aux.plot.hist: no visible global function definition for ‘dnorm’
    aux.plot.hist: no visible global function definition for ‘lines’
    aux.plot.hist: no visible global function definition for ‘abline’
    aux.scatter: no visible global function definition for ‘polygon’
    aux.scatter: no visible global function definition for ‘lines’
    aux.scatter: no visible binding for global variable ‘quantile’
    aux.scatter: no visible global function definition for ‘points’
    aux.scatter: no visible global function definition for ‘abline’
    aux.scatter.box: no visible global function definition for ‘boxplot’
    aux.scatter.box: no visible global function definition for ‘abline’
    calcnpde: no visible global function definition for ‘cov’
    calcnpde.sim: no visible global function definition for ‘cov’
    compute.bands: no visible global function definition for ‘rnorm’
    compute.bands: no visible global function definition for ‘runif’
    compute.bands: no visible binding for global variable ‘quantile’
    compute.bands: no visible global function definition for ‘qnorm’
    compute.bands.true: no visible binding for global variable ‘quantile’
    compute.vpc.pi : <anonymous>: no visible global function definition for
     ‘quantile’
    computenpde.loq: no visible global function definition for ‘runif’
    computenpde.loq: no visible global function definition for ‘qnorm’
    computenpde.omit: no visible global function definition for ‘runif’
    computenpde.omit: no visible global function definition for ‘qnorm’
    computepd.cdf: no visible global function definition for ‘runif’
    computepd.omit: no visible global function definition for ‘runif’
    computepd.replace: no visible global function definition for ‘runif’
    default.npde.plots: no visible global function definition for ‘par’
    dist.pred.sim: no visible global function definition for ‘runif’
    dist.pred.sim: no visible global function definition for ‘qnorm’
    gof.test.NpdeObject: no visible global function definition for ‘qnorm’
    gof.test.NpdeObject: no visible global function definition for ‘runif’
    gof.test.NpdeObject: no visible global function definition for ‘anova’
    gof.test.NpdeObject: no visible global function definition for ‘lm’
    gof.test.NpdeObject: no visible global function definition for
     ‘kruskal.test’
    gof.test.NpdeObject: no visible global function definition for
     ‘cor.test’
    gof.test.NpdeObject: no visible global function definition for
     ‘quantile’
    gof.test.NpdeRes: no visible global function definition for ‘qnorm’
    gof.test.numeric: no visible global function definition for ‘var’
    gof.test.numeric: no visible global function definition for ‘sd’
    gof.test.numeric: no visible global function definition for ‘t.test’
    gof.test.numeric: no visible global function definition for
     ‘wilcox.test’
    gof.test.numeric: no visible global function definition for ‘ks.test’
    gof.test.numeric: no visible global function definition for
     ‘shapiro.test’
    gof.test.numeric: no visible global function definition for ‘pchisq’
    npde: no visible global function definition for ‘new’
    npde.binning: no visible global function definition for ‘quantile’
    npde.binning: no visible global function definition for ‘Mclust’
    npde.plot.data: no visible global function definition for ‘par’
    npde.plot.data: no visible global function definition for ‘points’
    npde.plot.data: no visible global function definition for ‘lines’
    npde.plot.data: no visible global function definition for ‘abline’
    npde.plot.dist: no visible global function definition for ‘par’
    npde.plot.dist: no visible global function definition for ‘qnorm’
    npde.plot.dist: no visible global function definition for ‘quantile’
    npde.plot.loq: no visible global function definition for ‘par’
    npde.plot.loq: no visible binding for global variable ‘quantile’
    npde.plot.loq: no visible global function definition for ‘polygon’
    npde.plot.loq: no visible global function definition for ‘lines’
    npde.plot.scatter: no visible global function definition for ‘par’
    npde.plot.scatter: no visible global function definition for ‘qnorm’
    npde.plot.scatter: no visible global function definition for ‘quantile’
    npde.plot.vpc: no visible global function definition for ‘par’
    npde.plot.vpc: no visible binding for global variable ‘quantile’
    npde.plot.vpc: no visible global function definition for ‘polygon’
    npde.plot.vpc: no visible global function definition for ‘lines’
    npde.plot.vpc: no visible global function definition for ‘points’
    npde.plot.vpc: no visible global function definition for ‘abline’
    npdeData: no visible global function definition for ‘new’
    npdeSimData: no visible global function definition for ‘new’
    pdemenu: no visible global function definition for ‘read.table’
    plot.NpdeData: no visible global function definition for ‘par’
    plot.NpdeData: no visible global function definition for ‘points’
    plot.NpdeData: no visible global function definition for ‘lines’
    plot.NpdeData: no visible global function definition for ‘abline’
    plot.NpdeObject: no visible global function definition for ‘par’
    plot.NpdeRes: no visible global function definition for ‘par’
    plot.NpdeRes: no visible global function definition for ‘qqnorm’
    plot.NpdeRes: no visible global function definition for ‘qqline’
    plot.NpdeRes: no visible global function definition for ‘hist’
    plot.NpdeRes: no visible global function definition for ‘dnorm’
    plot.NpdeRes: no visible global function definition for ‘lines’
    plot.NpdeRes: no visible global function definition for ‘abline’
    plot.NpdeRes: no visible global function definition for ‘qnorm’
    plot.NpdeRes: no visible global function definition for ‘qqplot’
    plot.NpdeRes: no visible global function definition for ‘segments’
    npde.graphs,NpdeObject: no visible global function definition for
     ‘postscript’
    npde.graphs,NpdeObject: no visible global function definition for
     ‘jpeg’
    npde.graphs,NpdeObject: no visible global function definition for ‘png’
    npde.graphs,NpdeObject: no visible global function definition for ‘pdf’
    npde.graphs,NpdeObject: no visible global function definition for
     ‘dev.off’
    npde.save,NpdeObject: no visible global function definition for
     ‘write.table’
    read.npdeData,NpdeData: no visible global function definition for
     ‘read.table’
    read.npdeData,NpdeData: no visible global function definition for
     ‘head’
    read.npdeData,NpdeData: no visible global function definition for
     ‘validObject’
    read.npdeSimData,NpdeSimData: no visible global function definition for
     ‘read.table’
    read.npdeSimData,NpdeSimData: no visible global function definition for
     ‘head’
    read.npdeSimData,NpdeSimData: no visible global function definition for
     ‘validObject’
    show,NpdeObject: no visible global function definition for ‘show’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64

Version: 2.0
Check: Rd line widths
Result: NOTE
    Rd file 'dist.pred.sim.Rd':
     \examples lines wider than 100 characters:
     # defaults to computing the pd and npde for 100 simulated datasets (in the theophylline example, this uses all the simulated datasets)
    
    Rd file 'virload.Rd':
     \examples lines wider than 100 characters:
     plot(Log_VL~Time,data=virload,xlab="Time (d)",ylab="Viral loads, base 10 logarithmic scale (cp/mL)")
     plot(Log_VL~Time,data=virload50,xlab="Time (d)",ylab="Viral loads, base 10 logarithmic scale (cp/mL)")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.0
Check: R code for possible problems
Result: NOTE
    File ‘npde/R/zzz.R’:
     .onLoad calls:
     packageStartupMessage(" Loading library npde, version 2.0, August 2012\n please direct bugs, questions and feedback to emmanuelle.comets@inserm.fr\n")
    
    See section ‘Good practice’ in '?.onAttach'.
    
    npde.binning: no visible global function definition for ‘Mclust’
Flavors: r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64