CRAN Package Check Results for Package oce

Last updated on 2016-04-30 23:48:07.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-gcc 0.9-18 10.43 147.46 157.89 ERROR
r-devel-linux-x86_64-fedora-clang 0.9-18 268.65 ERROR
r-devel-linux-x86_64-fedora-gcc 0.9-18 251.15 ERROR
r-devel-osx-x86_64-clang 0.9-18 330.13 ERROR
r-devel-windows-ix86+x86_64 0.9-18 46.00 298.00 344.00 ERROR
r-patched-linux-x86_64 0.9-18 10.55 144.52 155.08 ERROR
r-patched-solaris-sparc 0.9-18 1803.60 ERROR
r-patched-solaris-x86 0.9-18 339.30 ERROR
r-release-linux-x86_64 0.9-18 11.40 149.76 161.16 ERROR
r-release-osx-x86_64-mavericks 0.9-18 OK
r-release-windows-ix86+x86_64 0.9-18 102.00 343.00 445.00 ERROR
r-oldrel-windows-ix86+x86_64 0.9-18 99.00 304.00 403.00 ERROR

Check Details

Version: 0.9-18
Check: tests
Result: ERROR
    Running the tests in ‘tests/testthat.R’ failed.
    Last 13 lines of output:
     `cs` not equal to `cs2`.
     Component "longitude": names for current but not for target
     Component "latitude": names for current but not for target
    
    
     testthat results ================================================================
     OK: 538 SKIPPED: 1 FAILED: 1
     1. Failure: lonlat2map() near Cape Split (@test_map.R#62)
    
     Error: testthat unit tests failed
     In addition: Warning message:
     Deprecated: please use `expect_lt()` instead
     Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-osx-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.9-18
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: gsw
    
     *** caught segfault ***
    address (nil), cause 'memory not mapped'
    
    Traceback:
     1: .Call("project_inv", as.integer(nc), as.double(xy[, 1]), as.double(xy[, 2]), proj, as.logical(use_ob_tran), PACKAGE = "rgdal")
     2: rgdal::project(cbind(x, y), proj = as.character(.Projection()$projection), inv = TRUE)
     3: map2lonlat(x0 - dx, y0 - dy)
     4: mapPlot(coastlineWorld, projection = "+proj=wintri", col = "lightgray")
     5: eval(expr, envir, enclos)
     6: eval(expr, envir, enclos)
     7: withVisible(eval(expr, envir, enclos))
     8: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
     9: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
    10: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler)
    11: evaluate::evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    12: in_dir(opts_knit$get("root.dir") %n% input_dir(), evaluate::evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    13: block_exec(params)
    14: call_block(x)
    15: process_group.block(group)
    16: process_group(group)
    17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    18: process_file(text, output)
    19: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet, encoding = encoding)
    20: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv())
    21: vweave_rmarkdown(...)
    22: engine$weave(file, quiet = quiet, encoding = enc)
    23: doTryCatch(return(expr), name, parentenv, handler)
    24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    25: tryCatchList(expr, classes, parentenv, handlers)
    26: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    27: buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/oce.Rcheck/vign_test/oce")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.9-18
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Loading required package: gsw
    
     *** caught segfault ***
    address (nil), cause 'memory not mapped'
    
    Traceback:
     1: .Call("project_inv", as.integer(nc), as.double(xy[, 1]), as.double(xy[, 2]), proj, as.logical(use_ob_tran), PACKAGE = "rgdal")
     2: rgdal::project(cbind(x, y), proj = as.character(.Projection()$projection), inv = TRUE)
     3: map2lonlat(x0 - dx, y0 - dy)
     4: mapPlot(coastlineWorld, projection = "+proj=wintri", col = "lightgray")
     5: eval(expr, envir, enclos)
     6: eval(expr, envir, enclos)
     7: withVisible(eval(expr, envir, enclos))
     8: withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler)
     9: handle(ev <- withCallingHandlers(withVisible(eval(expr, envir, enclos)), warning = wHandler, error = eHandler, message = mHandler))
    10: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler)
    11: evaluate::evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options))
    12: in_dir(opts_knit$get("root.dir") %n% input_dir(), evaluate::evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (options$error && options$include) 0L else 2L, output_handler = knit_handlers(options$render, options)))
    13: block_exec(params)
    14: call_block(x)
    15: process_group.block(group)
    16: process_group(group)
    17: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
    18: process_file(text, output)
    19: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet, encoding = encoding)
    20: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv())
    21: vweave_rmarkdown(...)
    22: engine$weave(file, quiet = quiet, encoding = enc)
    23: doTryCatch(return(expr), name, parentenv, handler)
    24: tryCatchOne(expr, names, parentenv, handlers[[1L]])
    25: tryCatchList(expr, classes, parentenv, handlers)
    26: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) find_vignette_product(name, by = "weave", engine = engine)}, error = function(e) { stop(gettextf("processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)), domain = NA, call. = FALSE)})
    27: buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/oce.Rcheck/vign_test/oce")
    An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.9-18
Check: installed package size
Result: NOTE
     installed size is 5.4Mb
     sub-directories of 1Mb or more:
     help 1.3Mb
     libs 1.2Mb
Flavor: r-devel-windows-ix86+x86_64

Version: 0.9-18
Check: running tests for arch ‘i386’
Result: ERROR
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     `cs` not equal to `cs2`.
     Component "longitude": names for current but not for target
     Component "latitude": names for current but not for target
    
    
     testthat results ================================================================
     OK: 538 SKIPPED: 1 FAILED: 1
     1. Failure: lonlat2map() near Cape Split (@test_map.R#62)
    
     Error: testthat unit tests failed
     In addition: Warning message:
     Deprecated: please use `expect_lt()` instead
     Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-18
Check: running tests for arch ‘x64’
Result: ERROR
    Running the tests in 'tests/testthat.R' failed.
    Last 13 lines of output:
     `cs` not equal to `cs2`.
     Component "longitude": names for current but not for target
     Component "latitude": names for current but not for target
    
    
     testthat results ================================================================
     OK: 538 SKIPPED: 1 FAILED: 1
     1. Failure: lonlat2map() near Cape Split (@test_map.R#62)
    
     Error: testthat unit tests failed
     In addition: Warning message:
     Deprecated: please use `expect_lt()` instead
     Execution halted
Flavors: r-devel-windows-ix86+x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.9-18
Check: whether package can be installed
Result: WARN
    Found the following significant warnings:
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/coastline-class.Rd:43: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/coastline-class.Rd:64: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/coastlineCut.Rd:31: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/coastlineWorld.Rd:17: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/coastlineWorld.Rd:54: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/lonlat2map.Rd:22: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/map2lonlat.Rd:31: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/map2lonlat.Rd:35: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/map2lonlat.Rd:38: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/map2lonlat.Rd:43: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/mapPlot.Rd:9: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/plot.coastline.Rd:147: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/read.landsat.Rd:43: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/read.landsat.Rd:92: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/satellite-class.Rd:155: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/swConservativeTemperature.Rd:31: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/swDepth.Rd:28: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/swPressure.Rd:22: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/swSTrho.Rd:28: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/swSoundSpeed.Rd:38: unknown macro '\CRANpkg'
     Warning: D:/temp/RtmpI5pNYs/R.INSTALL5c147c8bdf0/oce/man/tidem.Rd:35: unknown macro '\CRANpkg'
Flavor: r-oldrel-windows-ix86+x86_64

Version: 0.9-18
Check: Rd files
Result: WARN
    prepare_Rd: coastline-class.Rd:43: unknown macro '\CRANpkg'
    prepare_Rd: coastline-class.Rd:64: unknown macro '\CRANpkg'
    prepare_Rd: coastlineCut.Rd:31: unknown macro '\CRANpkg'
    prepare_Rd: coastlineWorld.Rd:17: unknown macro '\CRANpkg'
    prepare_Rd: coastlineWorld.Rd:54: unknown macro '\CRANpkg'
    prepare_Rd: lonlat2map.Rd:22: unknown macro '\CRANpkg'
    prepare_Rd: map2lonlat.Rd:31: unknown macro '\CRANpkg'
    prepare_Rd: map2lonlat.Rd:35: unknown macro '\CRANpkg'
    prepare_Rd: map2lonlat.Rd:38: unknown macro '\CRANpkg'
    prepare_Rd: map2lonlat.Rd:43: unknown macro '\CRANpkg'
    prepare_Rd: mapPlot.Rd:9: unknown macro '\CRANpkg'
    prepare_Rd: plot.coastline.Rd:147: unknown macro '\CRANpkg'
    prepare_Rd: read.landsat.Rd:43: unknown macro '\CRANpkg'
    prepare_Rd: read.landsat.Rd:92: unknown macro '\CRANpkg'
    prepare_Rd: satellite-class.Rd:155: unknown macro '\CRANpkg'
    prepare_Rd: swConservativeTemperature.Rd:31: unknown macro '\CRANpkg'
    prepare_Rd: swDepth.Rd:28: unknown macro '\CRANpkg'
    prepare_Rd: swPressure.Rd:22: unknown macro '\CRANpkg'
    prepare_Rd: swSTrho.Rd:28: unknown macro '\CRANpkg'
    prepare_Rd: swSoundSpeed.Rd:38: unknown macro '\CRANpkg'
    prepare_Rd: tidem.Rd:35: unknown macro '\CRANpkg'
Flavor: r-oldrel-windows-ix86+x86_64