CRAN Package Check Results for Package oncomodel

Last updated on 2016-09-29 04:47:26.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0 0.70 13.27 13.97 NOTE
r-devel-linux-x86_64-debian-gcc 1.0 0.74 13.35 14.09 NOTE
r-devel-linux-x86_64-fedora-clang 1.0 23.74 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0 22.41 NOTE
r-devel-macos-x86_64-clang 1.0 21.15 NOTE
r-devel-windows-ix86+x86_64 1.0 3.00 41.00 44.00 NOTE
r-patched-linux-x86_64 1.0 0.72 13.14 13.86 NOTE
r-patched-solaris-sparc 1.0 153.50 NOTE
r-patched-solaris-x86 1.0 33.50 NOTE
r-release-linux-x86_64 1.0 0.74 13.36 14.10 NOTE
r-release-osx-x86_64-mavericks 1.0 NOTE
r-release-windows-ix86+x86_64 1.0 4.00 31.00 35.00 NOTE
r-oldrel-windows-ix86+x86_64 1.0 6.00 31.00 37.00 OK

Check Details

Version: 1.0
Check: R code for possible problems
Result: NOTE
    Found an obsolete/platform-specific call in the following function:
     ‘comp.freq’
    Found the platform-specific device:
     ‘x11’
    dev.new() is the preferred way to open a new device, in the unlikely
    event one is needed.
    MLparameters: no visible global function definition for ‘optim’
    comp.freq: no visible global function definition for ‘x11’
    comp.freq: no visible global function definition for ‘par’
    comp.freq: no visible global function definition for ‘plot’
    Undefined global functions or variables:
     optim par plot x11
    Consider adding
     importFrom("grDevices", "x11")
     importFrom("graphics", "par", "plot")
     importFrom("stats", "optim")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-x86_64-clang, r-patched-linux-x86_64, r-patched-solaris-sparc, r-patched-solaris-x86, r-release-linux-x86_64

Version: 1.0
Check: Rd line widths
Result: NOTE
    Rd file 'oncomodel-package.Rd':
     \examples lines wider than 100 characters:
     #plot.phylog(y.phyl, cnodes =1, clabel.n=0.6, f=0.75, sub="Oncogenetic tree of given aberrations")
    
    These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0
Check: R code for possible problems
Result: NOTE
    MLparameters: no visible global function definition for 'optim'
    comp.freq: no visible global function definition for 'x11'
    comp.freq: no visible global function definition for 'par'
    comp.freq: no visible global function definition for 'plot'
    Undefined global functions or variables:
     optim par plot x11
    Consider adding
     importFrom("grDevices", "x11")
     importFrom("graphics", "par", "plot")
     importFrom("stats", "optim")
    to your NAMESPACE file.
Flavors: r-devel-windows-ix86+x86_64, r-release-osx-x86_64-mavericks, r-release-windows-ix86+x86_64